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  1. IGB
  2. IGBF-2877

Create annot.xml file from track hub's trackDb.txt file

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9

          Description

          We just need name parameter from trackDb.txt file. In future we might extract more information from trackDb.txt file like color. We can get the location of trackhubDB.txt file from the following API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt

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              Task - A task that needs to be done. IGBF-2878 Implement TrackHub Application 2 which is an endpoint for all the IGB requests.

              • Major - Major loss of function.
              • Closed

                Activity

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                chirag24 Chirag Chandrahas Shetty (Inactive) created issue -
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-2831 [ 19524 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Assignee Ann Loraine [ aloraine ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Description We just need name parameter from trackDb.txt file. In future we might extract more information from trackDb.txt file like color.

                		We just need name parameter from trackDb.txt file. In future we might extract more information from trackDb.txt file like color. We can get the location of trackhubDB.txt file from the following API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt
                  

                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ]
                omarne Omkar Marne (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                omarne Omkar Marne (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                omarne Omkar Marne (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Link This issue blocks IGBF-2878 [ IGBF-2878 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 6 2021 May 31 - June 11 [ 122 ] Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 122, 123 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Assignee Chirag Chandrahas Shetty [ chirag24 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
                Assignee Chirag Chandrahas Shetty [ chirag24 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 122, 123 ] Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9 [ 122, 123, 124 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                inaylor Irvin Naylor (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Assignee Chirag Chandrahas Shetty [ chirag24 ]
                inaylor Irvin Naylor (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    chirag24 Chirag Chandrahas Shetty (Inactive)
                    Reporter:
                    chirag24 Chirag Chandrahas Shetty (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: