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  1. IGB
  2. IGBF-2894

Investigate: How do other genome browsers support CRISPR visualization

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Investigate: How do the other genome browsers support visualizing guide RNA designs?

      Check the major supported browsers:

      • IGV javascript version
      • IGV java version
      • Jbrowse
      • UCSC genome browser
      • Ensembl genome browser

        Attachments

        1. CRISPRon_output.zip
          49 kB
        2. CRISPR-SURF_output.zip
          98 kB
        3. Ensembl_human.png
          Ensembl_human.png
          76 kB
        4. IGV-JavaScript_human.png
          IGV-JavaScript_human.png
          93 kB
        5. JBrowse_CRISPR-DT.png
          JBrowse_CRISPR-DT.png
          94 kB
        6. JBrowse_CRISPR-Plant.png
          JBrowse_CRISPR-Plant.png
          75 kB
        7. UCSC_CHOPCHOP-output.png
          UCSC_CHOPCHOP-output.png
          178 kB
        8. UCSC.png
          UCSC.png
          188 kB

          Activity

          No work has yet been logged on this issue.

            People

            • Assignee:
              nfreese Nowlan Freese
              Reporter:
              ann.loraine Ann Loraine
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              Dates

              • Created:
                Updated:
                Resolved: