Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2901

Create bed file parser and demo class for genoviz-sdk

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13, Fall 1 2021 Aug 16 - Aug 27, Fall 2 2021 Aug 30 - Sep10

          Description

          Create a bed file parser and corresponding demo class to visualize the parsed introns and exons data using any glyph within the genoviz library.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2865 Investigate glyphs representing introns in older versions of IGB

              • Major - Major loss of function.
              • Closed

                Activity

                Descending order - Click to sort in ascending order
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                This appears to be done. Moving to Done.

                Show
                ann.loraine Ann Loraine added a comment - This appears to be done. Moving to Done.
                Hide
                Permalink
                karthik Karthik Raveendran added a comment - - edited

                Initially rendering the .bed file in the map would take up to 5 mins. After a few changes in the data structures used, string functions, and algorithm optimization, the time taken went down to close to 85 secs. Further improvement on the data structure used and repainting strategy has reduced the time to almost 60s. Investigating IGB code for further improvement.

                Show
                karthik Karthik Raveendran added a comment - - edited Initially rendering the .bed file in the map would take up to 5 mins. After a few changes in the data structures used, string functions, and algorithm optimization, the time taken went down to close to 85 secs. Further improvement on the data structure used and repainting strategy has reduced the time to almost 60s. Investigating IGB code for further improvement.

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: