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  1. IGB
  2. IGBF-2901

Create bed file parser and demo class for genoviz-sdk

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13, Fall 1 2021 Aug 16 - Aug 27, Fall 2 2021 Aug 30 - Sep10

          Description

          Create a bed file parser and corresponding demo class to visualize the parsed introns and exons data using any glyph within the genoviz library.

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              Task - A task that needs to be done. IGBF-2865 Investigate glyphs representing introns in older versions of IGB

              • Major - Major loss of function.
              • Closed

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                karthik Karthik Raveendran added a comment - - edited

                Initially rendering the .bed file in the map would take up to 5 mins. After a few changes in the data structures used, string functions, and algorithm optimization, the time taken went down to close to 85 secs. Further improvement on the data structure used and repainting strategy has reduced the time to almost 60s. Investigating IGB code for further improvement.

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                karthik Karthik Raveendran added a comment - - edited Initially rendering the .bed file in the map would take up to 5 mins. After a few changes in the data structures used, string functions, and algorithm optimization, the time taken went down to close to 85 secs. Further improvement on the data structure used and repainting strategy has reduced the time to almost 60s. Investigating IGB code for further improvement.
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                ann.loraine Ann Loraine added a comment -

                This appears to be done. Moving to Done.

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                ann.loraine Ann Loraine added a comment - This appears to be done. Moving to Done.

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
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                    • Created:
                      Updated:
                      Resolved: