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  1. IGB
  2. IGBF-2903

Investigate why genome and assembly trackhub data sources are not loaded in IGB and fix the problem.

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Some public UCSC hubs can be added as data sources, however, they do not show up as such in the 'Available Data' pane when a genome they describe as supporting is opened in IGB. These include, but may not be limited to, hubs containing genome and assembly data. For example, see two problematic hubs below:

          Investigate why this is occurring by inspecting how the backend API handles these data sources and/or how IGB deals with them.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2898 Add listing of UCSC hubs to the bioviz trackhubs page

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                pbadzuh Philip Badzuh (Inactive) created issue -
                pbadzuh Philip Badzuh (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-2831 [ 19524 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Link This issue relates to IGBF-2898 [ IGBF-2898 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 3 2021 Jul 12 - Jul 23 [ 125 ] Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13 [ 125, 126 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                pbadzuh Philip Badzuh (Inactive) made changes -
                Summary Investigate why genome and assembly trackhub data sources are not loaded in IGB Investigate why genome and assembly trackhub data sources are not loaded in IGB and fix the problem.
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Assignee Philip Badzuh [ pbadzuh ]

                  People

                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    pbadzuh Philip Badzuh (Inactive)
                  • Votes:
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                    Watchers:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: