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  1. IGB
  2. IGBF-2898

Add listing of UCSC hubs to the bioviz trackhubs page

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          3
        • Epic Link:
        • Sprint:
          Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13, Fall 1 2021 Aug 16 - Aug 27

          Description

          Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:

          • scroll through the list of available URLs
          • copy URLs and/or populate the converter input field
          • search URLs by the text contained within

          A collection of public hubs can be found here.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2892 Implement next iteration of track hub converter interface

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2903 Investigate why genome and assembly trackhub data sources are not loaded in IGB and fix the problem.

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2929 Fix hub URL validation

              • Major - Major loss of function.
              • Closed

                Activity

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                11 older comments
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                pbadzuh Philip Badzuh (Inactive) added a comment - - edited

                Merging existing changes to separate the below tasks into individual tickets.

                TODO:

                • fix url validation
                • open links in new tab
                • make tooltip and heading text more clear
                • change genome column's name and text content
                • make tooltip duration longer
                • move actions to table left - add fill arrow icon
                • move result section above table
                • ensure result section is in view during/after conversion
                • add info to result URL section
                • number rows
                • prevent result URL wrapping on hyphen

                Backend:

                • modify synonyms endpoint to ensure proper genome name in IGB header/topbar
                • add hub validation endpoint
                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - - edited Merging existing changes to separate the below tasks into individual tickets. TODO: fix url validation open links in new tab make tooltip and heading text more clear change genome column's name and text content make tooltip duration longer move actions to table left - add fill arrow icon move result section above table ensure result section is in view during/after conversion add info to result URL section number rows prevent result URL wrapping on hyphen Backend: modify synonyms endpoint to ensure proper genome name in IGB header/topbar add hub validation endpoint
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Please see PR here.

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - Please see PR here .
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                ann.loraine Ann Loraine added a comment -

                Thank you Philip Badzuh for the TO-DO and Backend lists in the next-to-last comment before this one. Next step is to make individual JIRA issues for each one, using the bullet point text as titles, with maybe one or two minor edits, e.g., "Number the rows"

                Show
                ann.loraine Ann Loraine added a comment - Thank you Philip Badzuh for the TO-DO and Backend lists in the next-to-last comment before this one. Next step is to make individual JIRA issues for each one, using the bullet point text as titles, with maybe one or two minor edits, e.g., "Number the rows"
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Merged and deployed for testing.

                Show
                ann.loraine Ann Loraine added a comment - Merged and deployed for testing.
                Hide
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                ann.loraine Ann Loraine added a comment -

                Tested that the code properly deployed by reloading the page and observed that the "Track hub" link in the upper menu disappeared. Moving to closed.

                Show
                ann.loraine Ann Loraine added a comment - Tested that the code properly deployed by reloading the page and observed that the "Track hub" link in the upper menu disappeared. Moving to closed.

                  People

                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    pbadzuh Philip Badzuh (Inactive)
                  • Votes:
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                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: