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  1. IGB
  2. IGBF-2952

Add UCSC dm6 fruit fly genome and annotation to IGB

        Details

        • Story Points:
          1.5
        • Epic Link:
        • Sprint:
          Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24, Fall 8 2021 Nov 29 - Dec 10

          Description

          Situation: A discrepancy was identified in the current released version of the dm6 genome in IGB and the genome available through UCSC. This may confuse users who attempt to load data using UCSC DAS.

          Task: Add the UCSC dm6 genome and annotation to IGB.

            Attachments

            1. screenshot-1.png
              screenshot-1.png
              151 kB
            2. screenshot-2.png
              screenshot-2.png
              144 kB
            3. screenshot-3.png
              screenshot-3.png
              131 kB
            4. screenshot-4.png
              screenshot-4.png
              106 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3330 Add mm39 (GRCm39) mouse genome to IGB

              • Major - Major loss of function.
              • Closed

              Updated Genome - After a genome has been updated and committed to SVN IGBF-2696 Add blacklist regions to IGB quickload for mouse, human, fruit fly

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2696 [ IGBF-2696 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021 Sep 13 - Sep 24 [ 129 ] Fall 3 2021 Sep 13 - Sep 24, Fall 4 2021 Sep 27 - Oct 8 [ 129, 130 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021 Sep 13 - Sep 24, Fall 4 2021 Sep 27 - Oct 8 [ 129, 130 ] Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ] Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 129, 132, 133 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 129, 132, 133 ] Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ] Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 129, 132, 133 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Omkar Marne [ omarne ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-1.png [ 16975 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-2.png [ 16976 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-2.png [ 16976 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-2.png [ 16977 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-3.png [ 16978 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Ann Loraine [ aloraine ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                nfreese Nowlan Freese made changes -
                Assignee Omkar Marne [ omarne ]
                omarne Omkar Marne (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-4.png [ 16984 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24 [ 129, 132, 133 ] Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24, Fall 8 2021 Nov 29 - Dec 10 [ 129, 132, 133, 134 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                omarne Omkar Marne (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Fix Version/s 9.1.10 Major Release [ 10700 ]
                nfreese Nowlan Freese made changes -
                Issue Type Task [ 3 ] Updated Genome [ 11 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3330 [ IGBF-3330 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3666 [ IGBF-3666 ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: