[IGBF-2952] Add UCSC dm6 fruit fly genome and annotation to IGB - JIRA UNCC

Details

Type: Updated Genome
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: 9.1.10 Major Release
Labels:
None

Story Points:
1.5
Epic Link:
Improve IGB for users
Sprint:
Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24, Fall 8 2021 Nov 29 - Dec 10

Description

Situation: A discrepancy was identified in the current released version of the dm6 genome in IGB and the genome available through UCSC. This may confuse users who attempt to load data using UCSC DAS.

Task: Add the UCSC dm6 genome and annotation to IGB.

Attachments

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Attachments

screenshot-1.png
151 kB
22/Nov/21 2:39 PM
screenshot-2.png
144 kB
22/Nov/21 2:43 PM
screenshot-3.png
131 kB
22/Nov/21 2:51 PM
screenshot-4.png
106 kB
24/Nov/21 1:15 AM

Issue Links

relates to

IGBF-3330 Add mm39 (GRCm39) mouse genome to IGB

Closed

IGBF-2696 Add blacklist regions to IGB quickload for mouse, human, fruit fly

Closed

Activity

Ascending order - Click to sort in descending order

Nowlan Freese created issue - 21/Sep/21 4:48 PM

Nowlan Freese made changes - 21/Sep/21 4:48 PM

Field	Original Value	New Value
Epic Link		IGBF-1765 [ 17855 ]

Nowlan Freese made changes - 21/Sep/21 4:48 PM

Link

This issue relates to ~~IGBF-2696~~ [ ~~IGBF-2696~~ ]

Nowlan Freese made changes - 23/Sep/21 9:34 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Nowlan Freese made changes - 23/Sep/21 9:34 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Nowlan Freese made changes - 23/Sep/21 2:24 PM

Assignee

Nowlan Freese [ nfreese ]

Nowlan Freese made changes - 23/Sep/21 4:41 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 27/Sep/21 9:16 AM

Sprint

Fall 3 2021 Sep 13 - Sep 24 [ 129 ]

Fall 3 2021 Sep 13 - Sep 24, Fall 4 2021 Sep 27 - Oct 8 [ 129, 130 ]

Ann Loraine made changes - 27/Sep/21 9:16 AM

Rank

Ranked higher

Nowlan Freese made changes - 27/Sep/21 10:30 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Ann Loraine made changes - 28/Sep/21 10:17 AM

Sprint

Fall 3 2021 Sep 13 - Sep 24, Fall 4 2021 Sep 27 - Oct 8 [ 129, 130 ]

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ]

Nowlan Freese made changes - 03/Nov/21 11:57 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Nowlan Freese made changes - 03/Nov/21 1:46 PM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Nowlan Freese made changes - 03/Nov/21 2:58 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 08/Nov/21 7:38 AM

Sprint

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ]

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 129, 132, 133 ]

Ann Loraine made changes - 08/Nov/21 7:38 AM

Rank

Ranked higher

Nowlan Freese made changes - 08/Nov/21 10:10 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Ann Loraine made changes - 11/Nov/21 5:01 PM

Sprint

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 129, 132, 133 ]

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ]

Ann Loraine made changes - 11/Nov/21 5:01 PM

Rank

Ranked lower

Ann Loraine made changes - 11/Nov/21 5:02 PM

Sprint

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5 [ 129, 132 ]

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 129, 132, 133 ]

Ann Loraine made changes - 11/Nov/21 5:02 PM

Rank

Ranked higher

Nowlan Freese made changes - 15/Nov/21 1:30 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Nowlan Freese made changes - 17/Nov/21 9:57 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Nowlan Freese made changes - 18/Nov/21 10:54 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Nowlan Freese made changes - 19/Nov/21 2:50 PM

Assignee

Nowlan Freese [ nfreese ]

Omkar Marne [ omarne ]

Nowlan Freese made changes - 19/Nov/21 2:50 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:39 PM

Attachment

screenshot-1.png [ 16975 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:40 PM

Attachment

screenshot-2.png [ 16976 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:42 PM

Attachment

screenshot-2.png [ 16976 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:43 PM

Attachment

screenshot-2.png [ 16977 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:51 PM

Attachment

screenshot-3.png [ 16978 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:55 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Omkar Marne (Inactive) made changes - 22/Nov/21 2:56 PM

Assignee

Omkar Marne [ omarne ]

Nowlan Freese [ nfreese ]

Nowlan Freese made changes - 22/Nov/21 3:10 PM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Nowlan Freese made changes - 22/Nov/21 5:52 PM

Assignee

Nowlan Freese [ nfreese ]

Ann Loraine [ aloraine ]

Nowlan Freese made changes - 22/Nov/21 5:52 PM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Ann Loraine made changes - 23/Nov/21 10:29 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 23/Nov/21 10:29 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Ann Loraine made changes - 23/Nov/21 10:29 AM

Assignee

Ann Loraine [ aloraine ]

Nowlan Freese made changes - 23/Nov/21 10:54 AM

Assignee

Omkar Marne [ omarne ]

Omkar Marne (Inactive) made changes - 23/Nov/21 2:23 PM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Omkar Marne (Inactive) made changes - 24/Nov/21 1:15 AM

Attachment

screenshot-4.png [ 16984 ]

Ann Loraine made changes - 27/Nov/21 10:42 AM

Sprint

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24 [ 129, 132, 133 ]

Fall 3 2021 Sep 13 - Sep 24, Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24, Fall 8 2021 Nov 29 - Dec 10 [ 129, 132, 133, 134 ]

Ann Loraine made changes - 27/Nov/21 10:42 AM

Rank

Ranked higher

Omkar Marne (Inactive) made changes - 28/Nov/21 9:26 PM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

Omkar Marne (Inactive) made changes - 28/Nov/21 9:26 PM

Assignee

Omkar Marne [ omarne ]

Nowlan Freese [ nfreese ]

Nowlan Freese made changes - 04/Aug/22 3:19 PM

Fix Version/s

9.1.10 Major Release [ 10700 ]

Nowlan Freese made changes - 04/Aug/22 4:40 PM

Issue Type

Task [ 3 ]

Updated Genome [ 11 ]

Nowlan Freese made changes - 02/May/23 8:54 AM

Link

This issue relates to ~~IGBF-3330~~ [ ~~IGBF-3330~~ ]

Nowlan Freese made changes - 01/Apr/24 10:48 AM

Link

This issue relates to IGBF-3666 [ IGBF-3666 ]

People

Assignee:

Nowlan Freese

Reporter:

Nowlan Freese

Votes:

0 Vote for this issue

Watchers:

3 Start watching this issue

Dates

Created:

21/Sep/21 4:48 PM

Updated:

01/Apr/24 10:48 AM

Resolved:

28/Nov/21 9:26 PM