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  1. IGB
  2. IGBF-2973

Improve Species/Genome right panel

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Task: Update the metadata right panel in BioViz Connect to more closely match the appearance of the species and genome version selection in IGB.

          Change Genome Version to:
          Choose species, then genome version

          Change Species... to:
          Species

          Change Version... to:
          Genome Version

            Attachments

              Issue Links

              blocks

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2981 Prevent BioViz Connect from saving values from the interface into metadata fields for genome version and species

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-2376 [ 18533 ]
                nfreese Nowlan Freese made changes -
                Description Task: Update the metadata right panel in BioViz Connect to more closely match the appearance of the species and genome version selection in IGB.

                Change -Genome Version- to:
                Choose species, then genome version

                Change -Species...- to:
                Species

                Change -Version...- to:
                Genome Version                 		Task: Update the metadata right panel in BioViz Connect to more closely match the appearance of the species and genome version selection in IGB.

                Change *Genome Version* to:
                Choose species, then genome version

                Change *Species...* to:
                Species

                Change *Version...* to:
                Genome Version
                nfreese Nowlan Freese made changes -
                Description Task: Update the metadata right panel in BioViz Connect to more closely match the appearance of the species and genome version selection in IGB.

                Change *Genome Version* to:
                Choose species, then genome version

                Change *Species...* to:
                Species

                Change *Version...* to:
                Genome Version                 		Task: Update the metadata right panel in BioViz Connect to more closely match the appearance of the species and genome version selection in IGB.

                Change Genome Version to:
                Choose species, then genome version

                Change Species... to:
                Species

                Change Version... to:
                Genome Version
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                karthik Karthik Raveendran made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
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                karthik Karthik Raveendran added a comment -

                Pushed changes to repo.Commit in branch IGBF-2973

                All three changes below were made
                Change Genome Version to:Choose species, then genome version
                Change Species... to: Species
                Change Version... to: Genome Version

                Note: In some cases, in the file metadata, the species and version was saved as "Species..." and "Version..." itself. So when metadata is retrieved from Cyverse, the dropdowns will have those values which may seem like an error in the UI but its not. Its saved values being retrieved.

                Another improvement was added in this commit: A "Species" option is added to the dropdown so that the user can select and save that if they are are unsure of the species and version.

                Show
                karthik Karthik Raveendran added a comment - Pushed changes to repo. Commit in branch IGBF-2973 All three changes below were made Change Genome Version to:Choose species, then genome version Change Species... to: Species Change Version... to: Genome Version Note: In some cases, in the file metadata, the species and version was saved as "Species..." and "Version..." itself. So when metadata is retrieved from Cyverse, the dropdowns will have those values which may seem like an error in the UI but its not. Its saved values being retrieved. Another improvement was added in this commit: A "Species" option is added to the dropdown so that the user can select and save that if they are are unsure of the species and version.
                Hide
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                karthik Karthik Raveendran added a comment -

                Testing Protocol:
                Cosmetic Change: Please check if the dropdown titles have been changed
                Functionality Change: Save species as "Species and version as "Genome Version" as check if it is retrieved in when metadata panel is opened again.

                Show
                karthik Karthik Raveendran added a comment - Testing Protocol: Cosmetic Change: Please check if the dropdown titles have been changed Functionality Change: Save species as "Species and version as "Genome Version" as check if it is retrieved in when metadata panel is opened again.
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
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                ann.loraine Ann Loraine added a comment - - edited

                Files with improper metadata added for the species and genome version fields are expected to be limited to our (BV connect developers) accounts as per discussion 10/19/21 w/ KR, AL, NF.

                Show
                ann.loraine Ann Loraine added a comment - - edited Files with improper metadata added for the species and genome version fields are expected to be limited to our (BV connect developers) accounts as per discussion 10/19/21 w/ KR, AL, NF.
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Karthik Raveendran [ karthik ]
                ann.loraine Ann Loraine made changes -
                Link This issue blocks IGBF-2981 [ IGBF-2981 ]
                karthik Karthik Raveendran made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
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                nfreese Nowlan Freese added a comment -

                Merged https://bitbucket.org/nfreese/bioviz-connect/pull-requests/262/igbf-2973-fix-species-and-version?link_source=email

                Show
                nfreese Nowlan Freese added a comment - Merged https://bitbucket.org/nfreese/bioviz-connect/pull-requests/262/igbf-2973-fix-species-and-version?link_source=email
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Karthik Raveendran [ karthik ] Omkar Marne [ omarne ]
                Hide
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                ann.loraine Ann Loraine added a comment -

                Deployed for testing to https://bvctest6.bioviz.org.

                Show
                ann.loraine Ann Loraine added a comment - Deployed for testing to https://bvctest6.bioviz.org .
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                omarne Omkar Marne (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment bvctest.png [ 16802 ]
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                omarne Omkar Marne (Inactive) added a comment - - edited

                I created a cyverse account as I didn't have one. I uploaded below URL given by Dr. Freese for testing.

                http://igbquickload.org/quickload/A_gambiae_Feb_2003/A_gambiae_Feb_2003_ensGene.bed.gz

                Observations:

                • The dropdown title on https://bvctest6.bioviz.org have changed. For Species its "Species" and for version its "Genome Version".
                • After selecting species and genome version they can be retrieved after opening the metadata panel.

                Please check attached screenshot.

                Test results as successful. Closing the ticket.

                Show
                omarne Omkar Marne (Inactive) added a comment - - edited I created a cyverse account as I didn't have one. I uploaded below URL given by Dr. Freese for testing. http://igbquickload.org/quickload/A_gambiae_Feb_2003/A_gambiae_Feb_2003_ensGene.bed.gz Observations: The dropdown title on https://bvctest6.bioviz.org have changed. For Species its "Species" and for version its "Genome Version". After selecting species and genome version they can be retrieved after opening the metadata panel. Please check attached screenshot. Test results as successful. Closing the ticket.
                omarne Omkar Marne (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Karthik Raveendran [ karthik ]

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    4 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: