Merged and ready for testing using master branch installer(s) from bitbucket repository Downloads folder.

Test results on master branch :

• After clicking the given link the genome got automatically selected and the track name and name under available data was diseaseDa2d.bed. Please see screenshot 2.
• After removing the file and clicking the link again, the genome did not change, but the track name and name under available data was diseaseDa2d.bed. Please see screenshot 3.

A couple of questions with the above comments. Please address:

• Screenshot 2 does not include the title bar. Please always include the title bar as it shows the IGB version and genome. (Genome is also shown in the Current Genome tab)
• The Available Data section is different in the two screenshots. I thought the point of this change was to remove the URL components so that you don't see so many folders, by ensuring that the "sym name" fields is respected regardless of whether a genome version is indicated?
• I was confused as to what "sym name" is being passed in the test bookmarks. Is it the same as the file name?

Here are two new links to try (copy and paste them into web browser). The sym names have been changed so that they are different than the file names.

http://127.0.0.1:7085/IGBControl?
version=A_lyrata_Apr_2011&
cyverse_data=true&
sym_col_0=0x00FF00&
sym_bg_0=0xFF0000&
sym_name_0=exampleSymName1.bed&
query_url=https://data.cyverse.org/dav-anon/iplant/home/kraveend91/diseaseDa2d.bed&
feature_url_0=https://data.cyverse.org/dav-anon/iplant/home/kraveend91/diseaseDa2d.bed&
sym_method_0=https://data.cyverse.org/dav-anon/iplant/home/kraveend91/diseaseDa2d.bed&
loadresidues=false&
server_url=cyverse

http://127.0.0.1:7085/IGBControl?version=?&
cyverse_data=true&
sym_col_0=0x00FF00&
sym_bg_0=0xFF0000&
sym_name_0=exampleSymName2.bed&
query_url=https://data.cyverse.org/dav-anon/iplant/home/kraveend91/diseaseDa2d.bed&
feature_url_0=https://data.cyverse.org/dav-anon/iplant/home/kraveend91/diseaseDa2d.bed&
sym_method_0=https://data.cyverse.org/dav-anon/iplant/home/kraveend91/diseaseDa2d.bed&
loadresidues=false&
server_url=cyverse

Final Test results on the latest master branch.

• After clicking the given link the genome got automatically selected and the track name and name under available data was diseaseDa2d.bed. Please check the sym name in the screenshot 2. The symname is exampleSymName1.bed.
• After removing the file and clicking the link again, the genome did not change, the file name is same which is diseaseDa2d.bed. The symname is exampleSymName2.bed The full URL is not visible in the available data. Please see screenshot 3.

Dr. Freese and I also tested on galaxy and bioviz connect, the results are good.

Closing the ticket.