Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2990

Attend webinar and take notes describing improvements to CyVerse Apps

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Attachments

        Activity

        Hide
        nfreese Nowlan Freese added a comment -

        Notes:

        Type of apps
        Executable - user interface for command line tools (this is what we use for BioViz Connect)
        VICE - Visual and Interactive Computing Environment

        Apps Under Development - apps you the user are building
        My Public Apps - apps you have that have been made public
        High-Performance Computing - apps that use TACC resources
        My Collections - can create groups of apps

        The Documentation points to the example data in the DE that every app is supposed to have.
        They default analysis name to the nameOfTheApp_analysis1
        When you launch an analysis it immediately takes you to the analysis page(we did not do this in BioViz Connect since it would prevent a user from quickly launching multiple analyses).
        I do like that they have an info icon that shows most of the settings used to run that analysis in the analysis history.
        They also have a way to see the errors from failed analyses, but again, we made the BioViz Connect analyses as simple as possible, so unclear if useful.
        Made a point on special characters not being allowed when running analysis. I'm pretty sure we encode all special characters so the can be run on analysis. I thought DE did the same.

        VICE allows for applications that have a GUI.
        JupyterLab and RStudio as a VICE app.
        When I last talked with Jason Williams he mentioned trying to make IGB a VICE app.
        VICE apps last for 48 hours and are then terminated.
        Need to fill out an extra form to use VICE.
        Building VICE apps also involves creating Docker container, but is easier than the executable apps (https://learning.cyverse.org/en/latest/tools_and_apps.html).

        Can use a workflow to pipe one apps output through another app.
        Click on Create Workflow, add apps, then match the outputs to the inputs -> this could be very useful for BioViz Connect. Would need to investigate further to see how we could set this up to work.

        Show
        nfreese Nowlan Freese added a comment - Notes: Type of apps Executable - user interface for command line tools (this is what we use for BioViz Connect) VICE - Visual and Interactive Computing Environment Apps Under Development - apps you the user are building My Public Apps - apps you have that have been made public High-Performance Computing - apps that use TACC resources My Collections - can create groups of apps The Documentation points to the example data in the DE that every app is supposed to have. They default analysis name to the nameOfTheApp_analysis1 When you launch an analysis it immediately takes you to the analysis page(we did not do this in BioViz Connect since it would prevent a user from quickly launching multiple analyses). I do like that they have an info icon that shows most of the settings used to run that analysis in the analysis history. They also have a way to see the errors from failed analyses, but again, we made the BioViz Connect analyses as simple as possible, so unclear if useful. Made a point on special characters not being allowed when running analysis. I'm pretty sure we encode all special characters so the can be run on analysis. I thought DE did the same. VICE allows for applications that have a GUI. JupyterLab and RStudio as a VICE app. When I last talked with Jason Williams he mentioned trying to make IGB a VICE app. VICE apps last for 48 hours and are then terminated. Need to fill out an extra form to use VICE. Building VICE apps also involves creating Docker container, but is easier than the executable apps ( https://learning.cyverse.org/en/latest/tools_and_apps.html ). Can use a workflow to pipe one apps output through another app. Click on Create Workflow, add apps, then match the outputs to the inputs -> this could be very useful for BioViz Connect. Would need to investigate further to see how we could set this up to work.
        Hide
        nfreese Nowlan Freese added a comment -

        Main takeaway for me was that they have implemented workflows to allow for piping of output from one app into another. This was not possible when we originally started BioViz Connect. Will need to investigate further to see how we could use it.

        Show
        nfreese Nowlan Freese added a comment - Main takeaway for me was that they have implemented workflows to allow for piping of output from one app into another. This was not possible when we originally started BioViz Connect. Will need to investigate further to see how we could use it.

          People

          • Assignee:
            nfreese Nowlan Freese
            Reporter:
            ann.loraine Ann Loraine
          • Votes:
            0 Vote for this issue
            Watchers:
            2 Start watching this issue

            Dates

            • Created:
              Updated:
              Resolved: