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  1. IGB
  2. IGBF-3011

Investigate why galaxy.html tries to connect to jira.transvar.org

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: Attempting to load data from usegalaxy.org leads to the bioviz.org/galaxy.html page spinning for several minutes before loading data. It appears that the page is attempting to contact jira.transvar.org.

          Task: Investigate why galaxy.html is attempting to contact jira.transvar.org.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-3012 Update jira links

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1880 [ 17970 ]
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                nfreese Nowlan Freese added a comment - - edited

                To replicate and test:

                1. Open IGB.
                2. Click on this link.
                • The page should say "Thank you for using IGB!"
                • Data should load in IGB.
                Show
                nfreese Nowlan Freese added a comment - - edited To replicate and test: Open IGB. Click on this link . The page should say "Thank you for using IGB!" Data should load in IGB.
                Hide
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                nfreese Nowlan Freese added a comment -

                This is the address that bioviz.org/galaxy.html is attempting to connect to:

                https://jira.transvar.org/s/d41d8cd98f00b204e9800998ecf8427e/en_US-w52nn0-1988229788/6265/4/1.4.7/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?collectorId=b4dc1860

                Show
                nfreese Nowlan Freese added a comment - This is the address that bioviz.org/galaxy.html is attempting to connect to: https://jira.transvar.org/s/d41d8cd98f00b204e9800998ecf8427e/en_US-w52nn0-1988229788/6265/4/1.4.7/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?collectorId=b4dc1860
                nfreese Nowlan Freese made changes -
                Description Situation: Attempting to load data from usegalaxy.org leads to the bioviz.org/galaxy.html page spinning for several minutes before loading data. It appears that the page is attempting to contact jira.transvar.org.

                Task: Investigate why galaxy.html or galaxy.js are attempting to contact jira.transvar.org.                 		Situation: Attempting to load data from usegalaxy.org leads to the bioviz.org/galaxy.html page spinning for several minutes before loading data. It appears that the page is attempting to contact jira.transvar.org.

                Task: Investigate why galaxy.html is attempting to contact jira.transvar.org.
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                nfreese Nowlan Freese added a comment - - edited

                The jira link was added in this commit: https://bitbucket.org/lorainelab/bioviz/commits/2a06ccd22f810c6c9b2d971207adc9929510999a#chg-htdocs/galaxy.html

                Show
                nfreese Nowlan Freese added a comment - - edited The jira link was added in this commit: https://bitbucket.org/lorainelab/bioviz/commits/2a06ccd22f810c6c9b2d971207adc9929510999a#chg-htdocs/galaxy.html
                ann.loraine Ann Loraine made changes -
                Link This issue blocks IGBF-3012 [ IGBF-3012 ]
                nfreese Nowlan Freese made changes -
                Story Points 1 0.25
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                nfreese Nowlan Freese added a comment -

                This issue appears to be fixed with the changes to IGBF-3012 by hitting jira.bioviz.org instead of the defunct jira.transvar.org. I think it would be good to maintain this ticket to make sure that we test that bioviz.org/galaxy.html is working correctly.

                To test on the test server:
                Open IGB.
                Click on this link.
                The page should successfully load and say "Thank you for using IGB!"
                The data should load in IGB.

                Show
                nfreese Nowlan Freese added a comment - This issue appears to be fixed with the changes to IGBF-3012 by hitting jira.bioviz.org instead of the defunct jira.transvar.org. I think it would be good to maintain this ticket to make sure that we test that bioviz.org/galaxy.html is working correctly. To test on the test server: Open IGB. Click on this link . The page should successfully load and say "Thank you for using IGB!" The data should load in IGB.
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Assignee Omkar Marne [ omarne ]
                omarne Omkar Marne (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                omarne Omkar Marne (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                omarne Omkar Marne (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-1.png [ 16970 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-2.png [ 16971 ]
                Hide
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                omarne Omkar Marne (Inactive) added a comment -

                After clicking the given the page appears which says 'Thank you for using IGB!, The data should load in IGB'. Please check screenshot 1.

                Please check screenshot-2 for the data loaded in the IGB.

                Show
                omarne Omkar Marne (Inactive) added a comment - After clicking the given the page appears which says 'Thank you for using IGB!, The data should load in IGB'. Please check screenshot 1. Please check screenshot-2 for the data loaded in the IGB.
                omarne Omkar Marne (Inactive) made changes -
                Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
                omarne Omkar Marne (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                omarne Omkar Marne (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                omarne Omkar Marne (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]
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                nfreese Nowlan Freese added a comment -

                Pull request was submitted as part of IGBF-3012.

                Show
                nfreese Nowlan Freese added a comment - Pull request was submitted as part of IGBF-3012 .
                Hide
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                ann.loraine Ann Loraine added a comment -

                PR is merged and changes deployed to BioViz Main.

                Show
                ann.loraine Ann Loraine added a comment - PR is merged and changes deployed to BioViz Main.
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Omkar Marne [ omarne ]
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                nfreese Nowlan Freese added a comment -

                Omkar Marne - Follow instructions in my first comment to test.

                Show
                nfreese Nowlan Freese added a comment - Omkar Marne - Follow instructions in my first comment to test.
                omarne Omkar Marne (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment screenshot-3.png [ 16974 ]
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                omarne Omkar Marne (Inactive) added a comment -

                The galaxy link is working. The page says Thank you for using IGB and data loads in IGB. 'bedgraph' file opens in IGB. Please check screenshot3.

                Closing the ticket.

                Show
                omarne Omkar Marne (Inactive) added a comment - The galaxy link is working. The page says Thank you for using IGB and data loads in IGB. 'bedgraph' file opens in IGB. Please check screenshot3. Closing the ticket.
                omarne Omkar Marne (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: