Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25, Spring 5 2022 Feb 28 - Mar 11, Spring 6 2022 Mar 14 - Mar 25
Description
In order to improve upon existing visualizations on single cell RNA seq data, a thorough investigation needs to be conducted. The investigation begins at the Aspen Institute Lecture by Aviv Regev that highlights the importance of such visual analyses and follow the breadcrumbs to find how improvements such as interactivity, connectivity to other resources such as genome browsers etc. can be introduced to the visualizations.
To that effect, the first task is to thoroughly understand how PCA and tSNE is used in the test cases (Test Case 3) mentioned in the Aviv Regev video, break down the key features of the visualization and find other cases where PCA and tSNE are used in single cell RNA seq analysis (similar or different purposes)
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2694 [ 18930 ] |
| Link | This issue blocks IGBF-2547 [ IGBF-2547 ] |
| Epic Link | IGBF-2694 [ 18930 ] | IGBF-2376 [ 18533 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 3 2022 Jan 31 - Feb 11 [ 138 ] | Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25 [ 138, 139 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description | To improve upon existing visualizations on single cell RNA seq data, a thorough investigation needs to be conducted. The investigation begins at the Aspen Institute Lecture by Aviv Regev that highlights in importance of such visual analyses and follow the breadcrumbs to find how improvements such as interactivity, connectivity to other resources such as genome browsers etc. can be done to the visualizations. |
In order to improve upon existing visualizations on single cell RNA seq data, a thorough investigation needs to be conducted. The investigation begins at the Aspen Institute Lecture by Aviv Regev that highlights the importance of such visual analyses and follow the breadcrumbs to find how improvements such as interactivity, connectivity to other resources such as genome browsers etc. can be introduced to the visualizations.
To that effect, the first task is to thoroughly understand how PCA and tSNE is used in the test cases mentioned in the Aviv Regev video, break down the key features of the visualization and find other cases where PCA and tSNE are used in single cell RNA seq analysis (similar or different purposes) |
| Attachment | 4 Test Cases in the Aspen Institute Lecture.pptx [ 17196 ] |
| Attachment | 4 Test Cases in the Aspen Institute Lecture.pptx [ 17167 ] |
| Attachment | 4 Test Cases in the Aspen Institute Lecture.pptx [ 17196 ] |
| Attachment | 4 Test Cases in the Aspen Institute Lecture.pptx [ 17197 ] |
| Sprint | Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25 [ 138, 139 ] | Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25, Spring 5 2022 Feb 28 - Mar 11 [ 138, 139, 140 ] |
| Rank | Ranked higher |
| Attachment | 4 Test Cases in the Aspen Institute Lecture.pptx [ 17198 ] |
| Attachment | 4 Test Cases in the Aspen Institute Lecture.pptx [ 17197 ] |
| Description |
In order to improve upon existing visualizations on single cell RNA seq data, a thorough investigation needs to be conducted. The investigation begins at the Aspen Institute Lecture by Aviv Regev that highlights the importance of such visual analyses and follow the breadcrumbs to find how improvements such as interactivity, connectivity to other resources such as genome browsers etc. can be introduced to the visualizations.
To that effect, the first task is to thoroughly understand how PCA and tSNE is used in the test cases mentioned in the Aviv Regev video, break down the key features of the visualization and find other cases where PCA and tSNE are used in single cell RNA seq analysis (similar or different purposes) |
In order to improve upon existing visualizations on single cell RNA seq data, a thorough investigation needs to be conducted. The investigation begins at the Aspen Institute Lecture by Aviv Regev that highlights the importance of such visual analyses and follow the breadcrumbs to find how improvements such as interactivity, connectivity to other resources such as genome browsers etc. can be introduced to the visualizations.
To that effect, the first task is to thoroughly understand how PCA and tSNE is used in the test cases (Test Case 3) mentioned in the Aviv Regev video, break down the key features of the visualization and find other cases where PCA and tSNE are used in single cell RNA seq analysis (similar or different purposes) |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25, Spring 5 2022 Feb 28 - Mar 11 [ 138, 139, 140 ] | Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25, Spring 5 2022 Feb 28 - Mar 11, Spring 6 2022 Mar 14 - Mar 25 [ 138, 139, 140, 141 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Karthik Raveendran [ karthik ] |