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  1. IGB
  2. IGBF-3084

Investigate graph operation problem

        Details

        • Type: Task
        • Status: In Progress (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: There is an issue with graph operations loading incorrectly at different zoom levels (see IGBF-3070).

          Task: Investigate the IGB codebase to determine why the graph operations are loading incorrectly.

          Steps for replicating the issue in IGB:

          Add http://lorainelab-quickload.scidas.org/hotpollen/ as a new data source
          Open the S_lycopersicum_Sep_2019 genome
          Navigate to SL4.0ch02:48,738,056-48,738,176

          Add the following scaled coverage graphs:
          are 28 only, rep 1, scaled coverage
          are 28 only, rep 2, scaled coverage
          are 28 only, rep 3, scaled coverage
          are 28 to 34, rep 1, scaled coverage
          are 28 to 34, rep 2, scaled coverage
          are 28 to 34, rep 3, scaled coverage

          Click Load Data
          Create Mean graphs for the two groups of 3
          Hide the original 6 scaled coverage graphs
          Create Diff graph from the means
          Navigate to SL4.0ch02:48,737,813-48,738,983
          Click Load Data 3 times

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3070 Replicate graph addition problem

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3070 [ IGBF-3070 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2022 Feb 28 - Mar 11 [ 140 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                karthik Karthik Raveendran made changes -
                Sprint Spring 9 2022 Apr 25 - May 6 [ 144 ]
                karthik Karthik Raveendran made changes -
                Sprint Spring 9 2022 Apr 25 - May 6 [ 144 ] Spring 7 2022 Mar 28 - Apr 8 [ 142 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 7 2022 Mar 28 - Apr 8 [ 142 ]
                ann.loraine Ann Loraine made changes -
                Assignee Karthik Raveendran [ karthik ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 7 2022 Mar 28 - Apr 8 [ 142 ]
                ann.loraine Ann Loraine made changes -
                Comment [ Moving out of the sprint to the top of the backlog. ]
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Assignee Karthik Raveendran [ karthik ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ]
                omarne Omkar Marne (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Hide
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                omarne Omkar Marne (Inactive) added a comment - - edited

                After clicking load data it appeared that only one of the mean tracks was created successfully while the other was not. Clicking load data again caused the corrupt difference track to appear.

                I investigated the IGB code base. I am not able pin point the data model for that track and what is incorrectly included for that track.

                Show
                omarne Omkar Marne (Inactive) added a comment - - edited After clicking load data it appeared that only one of the mean tracks was created successfully while the other was not. Clicking load data again caused the corrupt difference track to appear. I investigated the IGB code base. I am not able pin point the data model for that track and what is incorrectly included for that track.
                ann.loraine Ann Loraine made changes -
                Sprint Spring 7 2022 Mar 28 - Apr 8 [ 142 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ]

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated: