Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Sprint:Spring 6 2022 Mar 14 - Mar 25
Description
Task: Write materials and methods section for rice splicing and methylation for submission to Frontiers special issue.
Additional information:
- Google Drive folder for initial paper (once we are closer to submission we will move it to Dropbox): https://drive.google.com/drive/folders/1reCWmYj7jnIYPjy9PHT1KtURPrCSUnyG?usp=sharing
- Special issue submission site for Frontiers: https://www.frontiersin.org/research-topics/24549/regulation-of-alternative-splicing-in-plant-stress-responses
- Example paper from Frontiers (where we may submit): https://www.frontiersin.org/articles/10.3389/fpls.2021.765003/full
- Author guidelines for Frontiers: https://www.frontiersin.org/about/author-guidelines
Attachments
Activity
Nowlan Freese
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Nowlan Freese
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Field | Original Value | New Value |
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Epic Link | IGBF-3039 [ 21553 ] |
Nowlan Freese
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Sprint | Spring 6 2022 Mar 14 - Mar 25 [ 141 ] |
Nowlan Freese
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Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
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Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
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Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
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Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
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Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Nowlan Freese
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Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Nowlan Freese
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Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Nowlan Freese
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Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
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Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
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Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
The materials and methods are complete for the Plant Material and Growth Conditions, Na+ and K+ ion analysis, Whole Genome Bisulfite Sequencing, and RNA-Seq. Additional sections may be required for further analyses, such as Gene Ontology, comparison of bisulfite and RNA data, etc.
I have added the samplesheet.valid.csv and software_versions.yml to the bitbucket repo (commit)
Closing ticket for now.