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  1. IGB
  2. IGBF-3098

Generate RNA-Seq junctions files

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Situation: The NF-core RNA-Seq pipeline did not output junctions files.

          Task: Create junctions files from the aligned RNA-Seq bam files on the cluster.

          Files are located: /nobackup/lorainelab/salty_rice/rna-seq/results/star_salmon

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                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  nfreese Nowlan Freese
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                  • Created:
                    Updated: