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  1. IGB
  2. IGBF-3181

Change coverage graph app output to bigwig

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: The current coverage graph apps are producing bedgraph as output. We would like to change the default output to bigwig as the bigwig files appear to load more quickly in IGB.

          Task: Copy the current apps, change the output to bigwig, make them public, and then replace the old apps with the new ones in the IGB Community.

          Note: Output "bigwig" format files will have extension ".bw"

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-3193 Implement dropdown menu item for Analyses in BioViz Connect

              • Major - Major loss of function.
              • To-Do
              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3186 Fix analysis name and output file name defaults not appearing

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2057 Publish IGB-CyVerse Apps

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-2376 [ 18533 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3186 [ IGBF-3186 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2057 [ IGBF-2057 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3193 [ IGBF-3193 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3193 [ IGBF-3193 ]
                nfreese Nowlan Freese made changes -
                Link This issue is blocked by IGBF-3193 [ IGBF-3193 ]
                nfreese Nowlan Freese made changes -
                Sprint Fall 3 2022 Sep 26 [ 155 ] Fall 4 2022 Oct 10 [ 156 ]
                nfreese Nowlan Freese made changes -
                Sprint Fall 4 2022 Oct 10 [ 156 ] Fall 3 2022 Sep 26 [ 155 ]
                ann.loraine Ann Loraine made changes -
                Description Situation: The current coverage graph apps are producing bedgraph as output. We would like to change the default output to bigwig as the bigwig files appear to load more quickly in IGB.

                Task: Copy the current apps, change the output to bigwig, make them public, and then replace the old apps with the new ones in the IGB Community.

                		Situation: The current coverage graph apps are producing bedgraph as output. We would like to change the default output to bigwig as the bigwig files appear to load more quickly in IGB.

                Task: Copy the current apps, change the output to bigwig, make them public, and then replace the old apps with the new ones in the IGB Community.

                Note: Output "bigwig" format files will have extension ".bw"

                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Attachment duplicate.png [ 17275 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2022 Sep 26 [ 155 ] Fall 3 2022 Sep 26, Fall 4 2022 Oct 10 [ 155, 156 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: