Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Story Points:0.5
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Epic Link:
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Sprint:Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10
Description
In the ProtAnnot app, a link connecting to an InterPro web page takes the user to a '404 page not found' page which will redirect to the correct page. Replace the existing link with the working link: http://www.ebi.ac.uk/interpro/about/interpro/
To find the dead link in ProtAnnot:
1. Open IGB.
2. Plug-ins > Launch App Manager
3. Install ProtAnnot
4. Open a genome
5. Click and drag to select some data to compare
6. In upper left, Tools > Start ProtAnnot
7. In ProtAnnot, click Run InterProScan...
8. In the new Job Configuration window, in bottom left notice the link "visit the Interpro Web page at EBI."
9. Clicking this link takes the user to "http://www.ebi.ac.uk/interpro/about.html/". Which is not valid, but redirects to the site's current About page.
Change the link so it takes the user directly to the InterPro About page: "http://www.ebi.ac.uk/interpro/about/interpro/"
Attachments
Issue Links
- blocks
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1908 [ 17998 ] |
| Attachment | LinkLocation.png [ 17450 ] |
| Description |
In the ProtAnnot app, a link connecting to an InterPro web page takes the user to a '404 page not found' page which will redirect to the correct page. Replace the existing link with the working link: http://www.ebi.ac.uk/interpro/about/interpro/
To find the dead link in ProtAnnot: 1. Open IGB. 2. Plug-ins > Launch App Manager 3. Install ProtAnnot 4. Open a genome 5. Click and drag to select some data to compare 6. In upper left, Tools > Start ProtAnnot 7. In ProtAnnot, click Run InterProScan... 8. In bottom left notice the link "visit the Interpro Web page at EBI." 9. Clicking this link takes the user to "http://www.ebi.ac.uk/interpro/about.html/". Which is not valid, but redirects to the site's current About page. Change the link so it takes the user directly to the InterPro About page: "http://www.ebi.ac.uk/interpro/about/interpro/" |
In the ProtAnnot app, a link connecting to an InterPro web page takes the user to a '404 page not found' page which will redirect to the correct page. Replace the existing link with the working link: http://www.ebi.ac.uk/interpro/about/interpro/
To find the dead link in ProtAnnot: 1. Open IGB. 2. Plug-ins > Launch App Manager 3. Install ProtAnnot 4. Open a genome 5. Click and drag to select some data to compare 6. In upper left, Tools > Start ProtAnnot 7. In ProtAnnot, click Run InterProScan... 8. In the new Job Configuration window, in bottom left notice the link "visit the Interpro Web page at EBI." 9. Clicking this link takes the user to "http://www.ebi.ac.uk/interpro/about.html/". Which is not valid, but redirects to the site's current About page. Change the link so it takes the user directly to the InterPro About page: "http://www.ebi.ac.uk/interpro/about/interpro/" |
| Labels | ProtAnnot | ProtAnnot beginner |
| Sprint | Summer 2 2023 May 29 [ 171 ] |
| Sprint | Summer 2 2023 May 29 [ 171 ] | Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ] |
| Rank | Ranked higher |
| Sprint | Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ] | Summer 2 2023 May 29, Summer 4 2023 June 26 [ 171, 173 ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Kaushik Gopu [ kgopu ] | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Kaushik Gopu [ kgopu ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Kaushik Gopu [ kgopu ] | Nowlan Freese [ nfreese ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] | Kaushik Gopu [ kgopu ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Nowlan Freese [ nfreese ] | Kaushik Gopu [ kgopu ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
| Comment |
[ attn: [~kgopu]
The PR reference in the previous comment targets your fork, not the team repository. The team repo has one open PR which does not include the squashed commit mentioned above. So I guess it needs to be updated also. Team repository PRs are here: * https://bitbucket.org/lorainelab/protannot/pull-requests/ ] |
| Status | To-Do [ 10305 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Sprint | Summer 2 2023 May 29, Summer 4 2023 June 26 [ 171, 173 ] | Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10 [ 171, 173, 174 ] |
| Rank | Ranked higher |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Kaushik Gopu [ kgopu ] |