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  1. IGB
  2. IGBF-3210

Ensure that scidas URLs are primary quickload's for default IGB quickloads

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          Description

          UNC Charlotte users can't access igbquickload.org due to misconfiguration of their network.

          Therefore we need to use the RENCI "scidas" domain as "primary" quickload addresses and igbquickload as secondary, "mirror" addresses.

          This is configured in: core/igb-preferences/src/main/resources/igbDefaultPrefs.json

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              ann.loraine Ann Loraine added a comment -

              There are two sites that use "igbquickload.org" as the primary site and "scidas" as the backup.

              URL and mirror need to switched in the following code:

              "server": [
            {
                "factoryName": "quickload",
                "name": "RNA-Seq",
                "url": "http://igbquickload.org/rnaseq",
                "loadPriority": "0",
                "mirror":"http://lorainelab-quickload.scidas.org/rnaseq",
                "defaultDataProviderId": "IgbDefaultDataProviderId:2"
            },
            {
                "factoryName": "quickload",
                "name": "IGB Quickload",
                "url": "http://igbquickload.org/quickload",
                "loadPriority": "2",
                "mirror": "http://lorainelab-quickload.scidas.org/quickload",
                "defaultDataProviderId": "IgbDefaultDataProviderId:1"
            },
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              ann.loraine Ann Loraine added a comment - There are two sites that use "igbquickload.org" as the primary site and "scidas" as the backup. URL and mirror need to switched in the following code: "server" : [ { "factoryName" : "quickload" , "name" : "RNA-Seq" , "url" : "http: //igbquickload.org/rnaseq" , "loadPriority" : "0" , "mirror" : "http: //lorainelab-quickload.scidas.org/rnaseq" , "defaultDataProviderId" : "IgbDefaultDataProviderId:2" }, { "factoryName" : "quickload" , "name" : "IGB Quickload" , "url" : "http: //igbquickload.org/quickload" , "loadPriority" : "2" , "mirror" : "http: //lorainelab-quickload.scidas.org/quickload" , "defaultDataProviderId" : "IgbDefaultDataProviderId:1" },
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              nfreese Nowlan Freese added a comment -

              Commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/fb1b9d40574f1f5263ee73bf6fcb1f47ee9f0444

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              nfreese Nowlan Freese added a comment - Commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/fb1b9d40574f1f5263ee73bf6fcb1f47ee9f0444
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              ann.loraine Ann Loraine added a comment -

              Code is good. Please submit PR.

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              ann.loraine Ann Loraine added a comment - Code is good. Please submit PR.
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              nfreese Nowlan Freese added a comment - - edited

              Testing on NinerWiFi-PSK:
              IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/
              Arabidopsis thaliana gene annotation loaded quickly.
              Able to load TAIR 10 All genome from IGB Quickload.

              RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/
              Able to load Graph - Unscaled CoolT1 from RNA-Seq.

              Testing on eduroam:
              IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/
              Arabidopsis thaliana gene annotation loaded quickly.
              Able to load TAIR 10 All genome from IGB Quickload.

              RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/
              Able to load Graph - Unscaled CoolT1 from RNA-Seq.

              Show
              nfreese Nowlan Freese added a comment - - edited Testing on NinerWiFi-PSK: IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/ Arabidopsis thaliana gene annotation loaded quickly. Able to load TAIR 10 All genome from IGB Quickload. RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/ Able to load Graph - Unscaled CoolT1 from RNA-Seq. Testing on eduroam: IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/ Arabidopsis thaliana gene annotation loaded quickly. Able to load TAIR 10 All genome from IGB Quickload. RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/ Able to load Graph - Unscaled CoolT1 from RNA-Seq.
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              nfreese Nowlan Freese added a comment -

              Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/922/igbf-3210-make-scidas-urls-default

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              nfreese Nowlan Freese added a comment - Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/922/igbf-3210-make-scidas-urls-default
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              ann.loraine Ann Loraine added a comment -

              Merged.

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              ann.loraine Ann Loraine added a comment - Merged.
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              ann.loraine Ann Loraine added a comment -

              Master branch installers built and master.dmg notarized and uploaded to https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/.
              Read for testing.

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              ann.loraine Ann Loraine added a comment - Master branch installers built and master.dmg notarized and uploaded to https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/ . Read for testing.

                People

                • Assignee:
                  nfreese Nowlan Freese
                  Reporter:
                  ann.loraine Ann Loraine
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                  • Created:
                    Updated:
                    Resolved: