[IGBF-3210] Ensure that scidas URLs are primary quickload's for default IGB quickloads - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: 9.1.10 Major Release
Labels:
None

Story Points:
0.25
Epic Link:
Improve IGB for users
Sprint:
Fall 5 2022 Oct 24

Description

UNC Charlotte users can't access igbquickload.org due to misconfiguration of their network.

Therefore we need to use the RENCI "scidas" domain as "primary" quickload addresses and igbquickload as secondary, "mirror" addresses.

This is configured in: core/igb-preferences/src/main/resources/igbDefaultPrefs.json

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Ann Loraine created issue - 03/Nov/22 10:43 AM

Ann Loraine made changes - 03/Nov/22 10:43 AM

Field	Original Value	New Value
Epic Link		IGBF-1765 [ 17855 ]

Ann Loraine made changes - 03/Nov/22 10:44 AM

Description

UNC Charlotte users can't access igbquickload.org due to misconfiguration of their network.

Therefore we need to use the RENCI "scidas" domain as our primary quickload URLs

UNC Charlotte users can't access igbquickload.org due to misconfiguration of their network.

Therefore we need to use the RENCI "scidas" domain as our primary quickload URLs.

This is configured in: core/igb-preferences/src/main/resources/igbDefaultPrefs.json

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Ann Loraine added a comment - 03/Nov/22 10:49 AM

There are two sites that use "igbquickload.org" as the primary site and "scidas" as the backup.

URL and mirror need to switched in the following code:

"server": [
            {
                "factoryName": "quickload",
                "name": "RNA-Seq",
                "url": "http://igbquickload.org/rnaseq",
                "loadPriority": "0",
                "mirror":"http://lorainelab-quickload.scidas.org/rnaseq",
                "defaultDataProviderId": "IgbDefaultDataProviderId:2"
            },
            {
                "factoryName": "quickload",
                "name": "IGB Quickload",
                "url": "http://igbquickload.org/quickload",
                "loadPriority": "2",
                "mirror": "http://lorainelab-quickload.scidas.org/quickload",
                "defaultDataProviderId": "IgbDefaultDataProviderId:1"
            },

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Ann Loraine added a comment - 03/Nov/22 10:49 AM There are two sites that use "igbquickload.org" as the primary site and "scidas" as the backup. URL and mirror need to switched in the following code: "server" : [ { "factoryName" : "quickload" , "name" : "RNA-Seq" , "url" : "http: //igbquickload.org/rnaseq" , "loadPriority" : "0" , "mirror" : "http: //lorainelab-quickload.scidas.org/rnaseq" , "defaultDataProviderId" : "IgbDefaultDataProviderId:2" }, { "factoryName" : "quickload" , "name" : "IGB Quickload" , "url" : "http: //igbquickload.org/quickload" , "loadPriority" : "2" , "mirror" : "http: //lorainelab-quickload.scidas.org/quickload" , "defaultDataProviderId" : "IgbDefaultDataProviderId:1" },

Ann Loraine made changes - 03/Nov/22 10:49 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 03/Nov/22 10:51 AM

Description

UNC Charlotte users can't access igbquickload.org due to misconfiguration of their network.

Therefore we need to use the RENCI "scidas" domain as "primary" quickload addresses and igbquickload as secondary, "mirror" addresses.

This is configured in: core/igb-preferences/src/main/resources/igbDefaultPrefs.json

Ann Loraine made changes - 03/Nov/22 10:51 AM

Summary

Check that RENCI is the primary quickload for all sites

Ensure that RENCI is the primary quickload for all sites

Ann Loraine made changes - 03/Nov/22 11:47 AM

Summary

Ensure that RENCI is the primary quickload for all sites

Ensure that scidas URLs are primary quickload's for default IGB quickloads

Nowlan Freese made changes - 03/Nov/22 11:51 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Nowlan Freese made changes - 03/Nov/22 11:52 AM

Assignee

Nowlan Freese [ nfreese ]

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Nowlan Freese added a comment - 03/Nov/22 12:00 PM

Commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/fb1b9d40574f1f5263ee73bf6fcb1f47ee9f0444

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Nowlan Freese added a comment - 03/Nov/22 12:00 PM Commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/fb1b9d40574f1f5263ee73bf6fcb1f47ee9f0444

Nowlan Freese made changes - 03/Nov/22 12:00 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 03/Nov/22 12:16 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

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Ann Loraine added a comment - 03/Nov/22 12:16 PM

Code is good. Please submit PR.

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Ann Loraine added a comment - 03/Nov/22 12:16 PM Code is good. Please submit PR.

Ann Loraine made changes - 03/Nov/22 12:16 PM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

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Nowlan Freese added a comment - 03/Nov/22 12:17 PM - edited

Testing on NinerWiFi-PSK:
IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/
Arabidopsis thaliana gene annotation loaded quickly.
Able to load TAIR 10 All genome from IGB Quickload.

RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/
Able to load Graph - Unscaled CoolT1 from RNA-Seq.

Testing on eduroam:
IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/
Arabidopsis thaliana gene annotation loaded quickly.
Able to load TAIR 10 All genome from IGB Quickload.

RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/
Able to load Graph - Unscaled CoolT1 from RNA-Seq.

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Nowlan Freese added a comment - 03/Nov/22 12:17 PM - edited Testing on NinerWiFi-PSK: IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/ Arabidopsis thaliana gene annotation loaded quickly. Able to load TAIR 10 All genome from IGB Quickload. RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/ Able to load Graph - Unscaled CoolT1 from RNA-Seq. Testing on eduroam: IGB Quickload primary URL listed as http://lorainelab-quickload.scidas.org/quickload/ Arabidopsis thaliana gene annotation loaded quickly. Able to load TAIR 10 All genome from IGB Quickload. RNA-Seq primary URL listed as http://lorainelab-quickload.scidas.org/rnaseq/ Able to load Graph - Unscaled CoolT1 from RNA-Seq.

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Nowlan Freese added a comment - 03/Nov/22 12:18 PM

Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/922/igbf-3210-make-scidas-urls-default

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Nowlan Freese added a comment - 03/Nov/22 12:18 PM Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/922/igbf-3210-make-scidas-urls-default

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Ann Loraine added a comment - 03/Nov/22 12:19 PM

Merged.

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Ann Loraine added a comment - 03/Nov/22 12:19 PM Merged.

Nowlan Freese made changes - 03/Nov/22 12:19 PM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Nowlan Freese made changes - 03/Nov/22 12:19 PM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Nowlan Freese made changes - 03/Nov/22 12:19 PM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Nowlan Freese made changes - 03/Nov/22 12:19 PM

Assignee

Nowlan Freese [ nfreese ]

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Ann Loraine added a comment - 03/Nov/22 12:32 PM

Master branch installers built and master.dmg notarized and uploaded to https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/.
Read for testing.

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Ann Loraine added a comment - 03/Nov/22 12:32 PM Master branch installers built and master.dmg notarized and uploaded to https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/ . Read for testing.

Ann Loraine made changes - 03/Nov/22 12:32 PM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Ann Loraine made changes - 03/Nov/22 12:32 PM

Status

Post-merge Testing In Progress [ 10003 ]

Merged Needs Testing [ 10002 ]

Nowlan Freese made changes - 03/Nov/22 1:35 PM

Fix Version/s

9.1.10 Major Release [ 10700 ]

Nowlan Freese made changes - 03/Nov/22 1:37 PM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Nowlan Freese made changes - 03/Nov/22 1:56 PM

Assignee

Nowlan Freese [ nfreese ]

Nowlan Freese made changes - 03/Nov/22 1:56 PM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

People

Assignee:

Nowlan Freese

Reporter:

Ann Loraine

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Watchers:

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Dates

Created:

03/Nov/22 10:43 AM

Updated:

03/Nov/22 1:56 PM

Resolved:

03/Nov/22 1:56 PM