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  1. IGB
  2. IGBF-3217

Deploy splicing project data to Quickload for visualization

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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            ann.loraine Ann Loraine added a comment -

            Data are on UNC Charlotte cluster and need to be transferred to hosting on renci.
            Renci has a login node that you can use to set up an ssh tunnel.
            I need to copy the data using "scp" and a tunnel.
            Looking into it.

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            ann.loraine Ann Loraine added a comment - Data are on UNC Charlotte cluster and need to be transferred to hosting on renci. Renci has a login node that you can use to set up an ssh tunnel. I need to copy the data using "scp" and a tunnel. Looking into it.
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            ann.loraine Ann Loraine added a comment -

            Copied coverage graphs with:

            scp -J aloraine@hop.renci.org -r coverage_graphs aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/.

            Copied junction files from inside /nobackup/tomato_genome/alt_splicing/for_igbquickload with:

            scp -J aloraine@hop.renci.org -r junction_files aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/.
            Show
            ann.loraine Ann Loraine added a comment - Copied coverage graphs with: scp -J aloraine@hop.renci.org -r coverage_graphs aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/. Copied junction files from inside /nobackup/tomato_genome/alt_splicing/for_igbquickload with: scp -J aloraine@hop.renci.org -r junction_files aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/.
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            ann.loraine Ann Loraine added a comment -

            Data are now deployed here:

            http://lorainelab-quickload.scidas.org/hotpollen/S_lycopersicum_Jun_2022/

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            ann.loraine Ann Loraine added a comment - Data are now deployed here: http://lorainelab-quickload.scidas.org/hotpollen/S_lycopersicum_Jun_2022/

              People

              • Assignee:
                ann.loraine Ann Loraine
                Reporter:
                ann.loraine Ann Loraine
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                • Created:
                  Updated:
                  Resolved: