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  1. IGB
  2. IGBF-3217

Deploy splicing project data to Quickload for visualization

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Attachments

        Activity

        ann.loraine Ann Loraine created issue -
        ann.loraine Ann Loraine made changes -
        Field Original Value New Value
        Epic Link IGBF-2993 [ 21429 ]
        ann.loraine Ann Loraine made changes -
        Status To-Do [ 10305 ] In Progress [ 3 ]
        Hide
        ann.loraine Ann Loraine added a comment -

        Data are on UNC Charlotte cluster and need to be transferred to hosting on renci.
        Renci has a login node that you can use to set up an ssh tunnel.
        I need to copy the data using "scp" and a tunnel.
        Looking into it.

        Show
        ann.loraine Ann Loraine added a comment - Data are on UNC Charlotte cluster and need to be transferred to hosting on renci. Renci has a login node that you can use to set up an ssh tunnel. I need to copy the data using "scp" and a tunnel. Looking into it.
        Hide
        ann.loraine Ann Loraine added a comment -

        Copied coverage graphs with:

        scp -J aloraine@hop.renci.org -r coverage_graphs aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/.
        

        Copied junction files from inside /nobackup/tomato_genome/alt_splicing/for_igbquickload with:

        scp -J aloraine@hop.renci.org -r junction_files aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/.
        
        Show
        ann.loraine Ann Loraine added a comment - Copied coverage graphs with: scp -J aloraine@hop.renci.org -r coverage_graphs aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/. Copied junction files from inside /nobackup/tomato_genome/alt_splicing/for_igbquickload with: scp -J aloraine@hop.renci.org -r junction_files aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/hotpollen/S_lycopersicum_Jun_2022/.
        Hide
        ann.loraine Ann Loraine added a comment -
        Show
        ann.loraine Ann Loraine added a comment - Data are now deployed here: http://lorainelab-quickload.scidas.org/hotpollen/S_lycopersicum_Jun_2022/
        ann.loraine Ann Loraine made changes -
        Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
        ann.loraine Ann Loraine made changes -
        Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
        ann.loraine Ann Loraine made changes -
        Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
        ann.loraine Ann Loraine made changes -
        Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
        ann.loraine Ann Loraine made changes -
        Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
        ann.loraine Ann Loraine made changes -
        Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
        ann.loraine Ann Loraine made changes -
        Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
        ann.loraine Ann Loraine made changes -
        Resolution Done [ 10000 ]
        Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

          People

          • Assignee:
            ann.loraine Ann Loraine
            Reporter:
            ann.loraine Ann Loraine
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            Dates

            • Created:
              Updated:
              Resolved: