Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3228

Download and process data for SRP100604 and SRP268884

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16, Spring 3 2023 Feb 1, Spring 4 2023 Feb 21

          Attachments

            Issue Links

            blocks

            Task - A task that needs to be done. IGBF-3239 Create scaled coverage graphs for SRP100604 and SRP268884

            • Major - Major loss of function.
            • Closed
            relates to

            Task - A task that needs to be done. IGBF-3238 Create sample description sheets for SRP100604 and SRP268884

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-3143 Run RNA-Seq data processing pipeline on positive splicing control and experimental samples

            • Major - Major loss of function.
            • Closed

              Activity

              Ascending order - Click to sort in descending order
              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-3143 [ IGBF-3143 ]
              ann.loraine Ann Loraine made changes -
              Summary Download and run nf-core/rnaseq on SRP100604 and SRP268884 Download and process data for SRP100604 and SRP268884
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 7 2022 Nov 21 [ 159 ]
              Mdavis4290 Molly Davis made changes -
              Attachment Screen Shot 2022-11-30 at 6.32.58 PM.png [ 17567 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 7 2022 Nov 21 [ 159 ]
              Assignee Molly Davis [ molly ]
              ann.loraine Ann Loraine made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 7 2022 Nov 21 [ 159 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5 [ 159, 160 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint Fall 7 2022 Nov 21, Fall 8 2022 Dec 5 [ 159, 160 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26 [ 159, 160, 161 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-3238 [ IGBF-3238 ]
              ann.loraine Ann Loraine made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Mdavis4290 Molly Davis made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Mdavis4290 Molly Davis made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-3239 [ IGBF-3239 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-3239 [ IGBF-3239 ]
              ann.loraine Ann Loraine made changes -
              Link This issue blocks IGBF-3239 [ IGBF-3239 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26 [ 159, 160, 161 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16 [ 159, 160, 161, 162 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Attachment SRP268884_multiqc_report.html [ 17655 ]
              Mdavis4290 Molly Davis made changes -
              Attachment SRP100604_multiqc_report.html [ 17656 ]
              Mdavis4290 Molly Davis made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Mdavis4290 Molly Davis made changes -
              Attachment SRP268884_multiqc_report.html [ 17659 ]
              Mdavis4290 Molly Davis made changes -
              Attachment SRP268884_multiqc_report.html [ 17659 ]
              Mdavis4290 Molly Davis made changes -
              Attachment Final_SRP268884_multiqc_report.html [ 17660 ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16 [ 159, 160, 161, 162 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16, Spring 3 2023 Jan 30 [ 159, 160, 161, 162, 163 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              nfreese Nowlan Freese made changes -
              Sprint Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16, Spring 3 2023 Feb 1 [ 159, 160, 161, 162, 163 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16, Spring 3 2023 Feb 1, Spring 4 2023 Feb 21 [ 159, 160, 161, 162, 163, 164 ]
              nfreese Nowlan Freese made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Attachment SRP268884_multiqc_report.html [ 17655 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Comment [ Ran find junctions on SRP100604.
              Ran find junctions on SRP268884. ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ann.loraine Ann Loraine made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]

                People

                • Assignee:
                  Mdavis4290 Molly Davis
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: