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  1. IGB
  2. IGBF-3230

Visualize alternative splicing events

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16

          Description

          Create images showing RNA-Seq alignment alternative splicing evidence and differential gene expression between anther and pollen tube tissue types and also between desiccation stress and no desiccation stress samples.

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-3189 Annotate SL5 genes with RNA processing related functions

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3144 Make annots.xml for RNA-Seq junction, alignment, and coverage graphs

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3144 [ IGBF-3144 ]
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment - - edited

                Added IGB images on a branch, merged into main.

                Show
                ann.loraine Ann Loraine added a comment - - edited Added IGB images on a branch, merged into main.
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 2022 Nov 21 [ 159 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5 [ 159, 160 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 2022 Nov 21, Fall 8 2022 Dec 5 [ 159, 160 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26 [ 159, 160, 161 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26 [ 159, 160, 161 ] Fall 7 2022 Nov 21, Fall 8 2022 Dec 5, Spring 1 2023 Dec 26, Spring 2 2023 Jan 16 [ 159, 160, 161, 162 ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Link This issue is blocked by IGBF-3189 [ IGBF-3189 ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Data are deployed to IGB Quickload sites and multiple images added to repository. Moving to Done.

                Show
                ann.loraine Ann Loraine added a comment - Data are deployed to IGB Quickload sites and multiple images added to repository. Moving to Done.
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    1 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: