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  1. IGB
  2. IGBF-3242

Run nextflow for seedlingPollen dataset

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Re-run nextflow rnaseq pipeline in:

          /nobackup/tomato_genome/seedlingPollen/nfcore

          Using new samples.csv file with "reverse" in the strandedness field.

          Please just edit "samples.csv" in /nobackup/tomato_genome/seedlingPollen/nfcore.

          Note about sample names:

          MP - mature pollen
          Se - seedling
          N - nagcarlang
          H - heinz
          T - tamaulipas
          M - malintka
          S - stress
          C - control

          See folder in the google drive with info about the experiment:

          • Experiments > Pollen Grain and Seedling RNA-seq

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              relates to

              Task - A task that needs to be done. IGBF-3246 Generate list of EBSeq-HMM clusters for varieties and conditions

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: