Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:5
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Epic Link:
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Sprint:Spring 3 2023 Feb 1
Description
Run EBSeq-HMM on SL5 gene count files and report the lists of genes within each cluster.
- Create a new git repository for clustering code within hotpollen for the code
- Create a new merged table with results from "seedlingPollen" and "mark-2022-timeseries" in the Charlotte cluster file system
- Run EB-Seq on the merged file
- Produce human-readable, usable text files with results and tracking information indicating the source of the data used and also the version of the code that was used
- Share with collaborators: results files and markdown report