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  1. IGB
  2. IGBF-3255

Submit MJ time course data to SRA

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 1 2023 May 15, Summer 2 2023 May 29

          Description

          Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

          For sample info, see Google Drive.

          Files related to this task will be in Google Drive here:

          https://drive.google.com/drive/folders/1wR-eyIiUvHTvw9LB67YkFnfaZU3qFgKO?usp=share_link

          Details:
          The Azenta Invoice / account ID = 30-771363348
          (in the event we even need to contact them related to this project)

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3254 Submit Johnson lab mature pollen and tomato seedling data to SRA

              • Major - Major loss of function.
              • Closed

                Activity

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                11 older comments
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                robofjoy Robert Reid added a comment -

                2 weeks go by and all hell breaks loose.

                I had tested the .tsv Biosample file last week by uploading the file to the SRA submission page. It was acceptable once I changed the replicate column so that every entry was unique.
                I reloaded the same file today. No longer works. Baffling!!! New error!!
                Turns out that in the recent 2 week window that they have decided a NEW mandatory column is needed!!

                *collection_date

                I added this new column and added the year 2022. You can be more specific date wise but you do not have to be.
                So attached is the new .tsv sheet:

                SRA_BiosampleForm-Mark_TimeSeries - Plant.1.0-final.tsv

                The Google sheet above reflects the change as well.
                The SRA Gods have now been appeased with this latest offering and we are good to go.

                Show
                robofjoy Robert Reid added a comment - 2 weeks go by and all hell breaks loose. I had tested the .tsv Biosample file last week by uploading the file to the SRA submission page. It was acceptable once I changed the replicate column so that every entry was unique. I reloaded the same file today. No longer works. Baffling!!! New error!! Turns out that in the recent 2 week window that they have decided a NEW mandatory column is needed!! *collection_date I added this new column and added the year 2022. You can be more specific date wise but you do not have to be. So attached is the new .tsv sheet: SRA_BiosampleForm-Mark_TimeSeries - Plant.1.0-final.tsv The Google sheet above reflects the change as well. The SRA Gods have now been appeased with this latest offering and we are good to go.
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                There is a new template file on the SRA website that reflects the recent changes.
                I happen to ave their template file from 2 months ago and it does indeed appear to have just the *collection_date column added. Everything else is the same.

                Show
                robofjoy Robert Reid added a comment - There is a new template file on the SRA website that reflects the recent changes. I happen to ave their template file from 2 months ago and it does indeed appear to have just the *collection_date column added. Everything else is the same.
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                BioProject ID: PRJNA980666

                Show
                robofjoy Robert Reid added a comment - BioProject ID: PRJNA980666
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                Accession Title BioProject SRA Status Release Date Created Updated Submission BioSample.name BioSample.organism_name
                SAMN35640756 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836276 ToBeReleased 2023-08-01 2023-06-06T16:46:03.960Z 2023-06-08T05:55:20.716Z SUB12365647 T.34.60.4 Solanum lycopersicum
                SAMN35640709 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 1 PRJNA980666 SRR24836281 ToBeReleased 2023-08-01 2023-06-06T16:46:03.510Z 2023-06-08T05:55:19.776Z SUB12365647 N.28.120.1 Solanum lycopersicum
                SAMN35640755 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836277 ToBeReleased 2023-08-01 2023-06-06T16:46:03.950Z 2023-06-08T05:55:18.843Z SUB12365647 T.34.60.3 Solanum lycopersicum
                SAMN35640711 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836279 ToBeReleased 2023-08-01 2023-06-06T16:46:03.530Z 2023-06-08T05:55:17.860Z SUB12365647 N.28.120.3 Solanum lycopersicum
                SAMN35640712 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 1 PRJNA980666 SRR24836278 ToBeReleased 2023-08-01 2023-06-06T16:46:03.540Z 2023-06-08T05:55:16.826Z SUB12365647 N.34.120.1 Solanum lycopersicum
                SAMN35640710 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836280 ToBeReleased 2023-08-01 2023-06-06T16:46:03.520Z 2023-06-08T05:55:15.903Z SUB12365647 N.28.120.2 Solanum lycopersicum
                SAMN35640737 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836285 ToBeReleased 2023-08-01 2023-06-06T16:46:03.773Z 2023-06-08T05:55:14.893Z SUB12365647 T.34.30.3 Solanum lycopersicum
                SAMN35640740 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836282 ToBeReleased 2023-08-01 2023-06-06T16:46:03.803Z 2023-06-08T05:55:13.950Z SUB12365647 H.28.60.3 Solanum lycopersicum
                SAMN35640739 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836283 ToBeReleased 2023-08-01 2023-06-06T16:46:03.793Z 2023-06-08T05:55:12.846Z SUB12365647 H.28.60.2 Solanum lycopersicum
                SAMN35640738 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836284 ToBeReleased 2023-08-01 2023-06-06T16:46:03.783Z 2023-06-08T05:55:11.740Z SUB12365647 T.34.30.4 Solanum lycopersicum
                SAMN35640736 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836286 ToBeReleased 2023-08-01 2023-06-06T16:46:03.766Z 2023-06-08T05:55:10.670Z SUB12365647 T.34.30.1 Solanum lycopersicum
                SAMN35640706 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836287 ToBeReleased 2023-08-01 2023-06-06T16:46:03.483Z 2023-06-08T05:55:09.666Z SUB12365647 H.34.120.2 Solanum lycopersicum
                SAMN35640703 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836289 ToBeReleased 2023-08-01 2023-06-06T16:46:03.446Z 2023-06-08T05:55:08.736Z SUB12365647 H.28.120.2 Solanum lycopersicum
                SAMN35640735 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836288 ToBeReleased 2023-08-01 2023-06-06T16:46:03.756Z 2023-06-08T05:55:07.720Z SUB12365647 T.28.30.4 Solanum lycopersicum
                SAMN35640704 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836290 ToBeReleased 2023-08-01 2023-06-06T16:46:03.463Z 2023-06-08T05:55:06.710Z SUB12365647 H.28.120.3 Solanum lycopersicum
                SAMN35640713 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836291 ToBeReleased 2023-08-01 2023-06-06T16:46:03.550Z 2023-06-08T05:55:05.736Z SUB12365647 N.34.120.2 Solanum lycopersicum
                SAMN35640715 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836293 ToBeReleased 2023-08-01 2023-06-06T16:46:03.570Z 2023-06-08T05:55:04.826Z SUB12365647 T.28.120.2 Solanum lycopersicum
                SAMN35640714 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836292 ToBeReleased 2023-08-01 2023-06-06T16:46:03.560Z 2023-06-08T05:55:03.906Z SUB12365647 N.34.120.3 Solanum lycopersicum
                SAMN35640716 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836294 ToBeReleased 2023-08-01 2023-06-06T16:46:03.576Z 2023-06-08T05:55:02.933Z SUB12365647 T.28.120.3 Solanum lycopersicum
                SAMN35640717 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836295 ToBeReleased 2023-08-01 2023-06-06T16:46:03.586Z 2023-06-08T05:55:02.043Z SUB12365647 T.28.120.4 Solanum lycopersicum
                SAMN35640718 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836296 ToBeReleased 2023-08-01 2023-06-06T16:46:03.596Z 2023-06-08T05:55:01.143Z SUB12365647 T.34.120.2 Solanum lycopersicum
                SAMN35640754 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836298 ToBeReleased 2023-08-01 2023-06-06T16:46:03.940Z 2023-06-08T05:55:00.316Z SUB12365647 T.34.60.1 Solanum lycopersicum
                SAMN35640719 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836297 ToBeReleased 2023-08-01 2023-06-06T16:46:03.606Z 2023-06-08T05:54:59.393Z SUB12365647 T.34.120.3 Solanum lycopersicum
                SAMN35640753 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836299 ToBeReleased 2023-08-01 2023-06-06T16:46:03.930Z 2023-06-08T05:54:58.520Z SUB12365647 T.28.60.4 Solanum lycopersicum
                SAMN35640708 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836300 ToBeReleased 2023-08-01 2023-06-06T16:46:03.500Z 2023-06-08T05:54:57.596Z SUB12365647 H.34.120.4 Solanum lycopersicum
                SAMN35640752 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836301 ToBeReleased 2023-08-01 2023-06-06T16:46:03.920Z 2023-06-08T05:54:56.676Z SUB12365647 T.28.60.3 Solanum lycopersicum
                SAMN35640751 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836302 ToBeReleased 2023-08-01 2023-06-06T16:46:03.910Z 2023-06-08T05:54:55.750Z SUB12365647 T.28.60.1 Solanum lycopersicum
                SAMN35640750 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836303 ToBeReleased 2023-08-01 2023-06-06T16:46:03.896Z 2023-06-08T05:54:54.903Z SUB12365647 N.34.60.4 Solanum lycopersicum
                SAMN35640748 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836305 ToBeReleased 2023-08-01 2023-06-06T16:46:03.876Z 2023-06-08T05:54:53.896Z SUB12365647 N.34.60.1 Solanum lycopersicum
                SAMN35640749 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836304 ToBeReleased 2023-08-01 2023-06-06T16:46:03.886Z 2023-06-08T05:54:52.950Z SUB12365647 N.34.60.2 Solanum lycopersicum
                SAMN35640747 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836306 ToBeReleased 2023-08-01 2023-06-06T16:46:03.866Z 2023-06-08T05:54:52.066Z SUB12365647 N.28.60.4 Solanum lycopersicum
                SAMN35640746 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836307 ToBeReleased 2023-08-01 2023-06-06T16:46:03.860Z 2023-06-08T05:54:51.193Z SUB12365647 N.28.60.2 Solanum lycopersicum
                SAMN35640745 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836308 ToBeReleased 2023-08-01 2023-06-06T16:46:03.850Z 2023-06-08T05:54:50.180Z SUB12365647 N.28.60.1 Solanum lycopersicum
                SAMN35640744 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836309 ToBeReleased 2023-08-01 2023-06-06T16:46:03.840Z 2023-06-08T05:54:49.053Z SUB12365647 H.34.60.4 Solanum lycopersicum
                SAMN35640743 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836310 ToBeReleased 2023-08-01 2023-06-06T16:46:03.830Z 2023-06-08T05:54:47.683Z SUB12365647 H.34.60.3 Solanum lycopersicum
                SAMN35640707 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836311 ToBeReleased 2023-08-01 2023-06-06T16:46:03.493Z 2023-06-08T05:54:46.600Z SUB12365647 H.34.120.3 Solanum lycopersicum
                SAMN35640742 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836312 ToBeReleased 2023-08-01 2023-06-06T16:46:03.820Z 2023-06-08T05:54:45.646Z SUB12365647 H.34.60.2 Solanum lycopersicum
                SAMN35640741 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836313 ToBeReleased 2023-08-01 2023-06-06T16:46:03.813Z 2023-06-08T05:54:44.686Z SUB12365647 H.28.60.4 Solanum lycopersicum
                SAMN35640720 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836314 ToBeReleased 2023-08-01 2023-06-06T16:46:03.613Z 2023-06-08T05:54:43.566Z SUB12365647 T.34.120.4 Solanum lycopersicum
                SAMN35640705 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836317 ToBeReleased 2023-08-01 2023-06-06T16:46:03.473Z 2023-06-08T05:54:42.660Z SUB12365647 H.28.120.4 Solanum lycopersicum
                SAMN35640723 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836318 ToBeReleased 2023-08-01 2023-06-06T16:46:03.643Z 2023-06-08T05:54:41.813Z SUB12365647 H.28.30.4 Solanum lycopersicum
                SAMN35640721 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836315 ToBeReleased 2023-08-01 2023-06-06T16:46:03.623Z 2023-06-08T05:54:40.863Z SUB12365647 H.28.30.2 Solanum lycopersicum
                SAMN35640722 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836316 ToBeReleased 2023-08-01 2023-06-06T16:46:03.633Z 2023-06-08T05:54:39.793Z SUB12365647 H.28.30.3 Solanum lycopersicum
                SAMN35640726 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836321 ToBeReleased 2023-08-01 2023-06-06T16:46:03.670Z 2023-06-08T05:54:38.910Z SUB12365647 H.34.30.4 Solanum lycopersicum
                SAMN35640724 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836319 ToBeReleased 2023-08-01 2023-06-06T16:46:03.653Z 2023-06-08T05:54:38.053Z SUB12365647 H.34.30.2 Solanum lycopersicum
                SAMN35640725 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836320 ToBeReleased 2023-08-01 2023-06-06T16:46:03.663Z 2023-06-08T05:54:37.170Z SUB12365647 H.34.30.3 Solanum lycopersicum
                SAMN35640728 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836323 ToBeReleased 2023-08-01 2023-06-06T16:46:03.690Z 2023-06-08T05:54:36.256Z SUB12365647 N.28.30.2 Solanum lycopersicum
                SAMN35640727 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836322 ToBeReleased 2023-08-01 2023-06-06T16:46:03.680Z 2023-06-08T05:54:35.363Z SUB12365647 N.28.30.1 Solanum lycopersicum
                SAMN35640729 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836324 ToBeReleased 2023-08-01 2023-06-06T16:46:03.700Z 2023-06-08T05:54:34.506Z SUB12365647 N.28.30.4 Solanum lycopersicum
                SAMN35640732 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836327 ToBeReleased 2023-08-01 2023-06-06T16:46:03.726Z 2023-06-08T05:54:33.530Z SUB12365647 N.34.30.4 Solanum lycopersicum
                SAMN35640731 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836326 ToBeReleased 2023-08-01 2023-06-06T16:46:03.716Z 2023-06-08T05:54:32.606Z SUB12365647 N.34.30.2 Solanum lycopersicum
                SAMN35640730 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836325 ToBeReleased 2023-08-01 2023-06-06T16:46:03.710Z 2023-06-08T05:54:31.656Z SUB12365647 N.34.30.1 Solanum lycopersicum
                SAMN35640733 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836329 ToBeReleased 2023-08-01 2023-06-06T16:46:03.736Z 2023-06-08T05:54:30.606Z SUB12365647 T.28.30.1 Solanum lycopersicum
                SAMN35640734 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836328 ToBeReleased 2023-08-01 2023-06-06T16:46:03.746Z 2023-06-08T05:54:29.573Z SUB12365647 T.28.30.3 Solanum lycopersicum

                Show
                robofjoy Robert Reid added a comment - Accession Title BioProject SRA Status Release Date Created Updated Submission BioSample.name BioSample.organism_name SAMN35640756 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836276 ToBeReleased 2023-08-01 2023-06-06T16:46:03.960Z 2023-06-08T05:55:20.716Z SUB12365647 T.34.60.4 Solanum lycopersicum SAMN35640709 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 1 PRJNA980666 SRR24836281 ToBeReleased 2023-08-01 2023-06-06T16:46:03.510Z 2023-06-08T05:55:19.776Z SUB12365647 N.28.120.1 Solanum lycopersicum SAMN35640755 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836277 ToBeReleased 2023-08-01 2023-06-06T16:46:03.950Z 2023-06-08T05:55:18.843Z SUB12365647 T.34.60.3 Solanum lycopersicum SAMN35640711 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836279 ToBeReleased 2023-08-01 2023-06-06T16:46:03.530Z 2023-06-08T05:55:17.860Z SUB12365647 N.28.120.3 Solanum lycopersicum SAMN35640712 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 1 PRJNA980666 SRR24836278 ToBeReleased 2023-08-01 2023-06-06T16:46:03.540Z 2023-06-08T05:55:16.826Z SUB12365647 N.34.120.1 Solanum lycopersicum SAMN35640710 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836280 ToBeReleased 2023-08-01 2023-06-06T16:46:03.520Z 2023-06-08T05:55:15.903Z SUB12365647 N.28.120.2 Solanum lycopersicum SAMN35640737 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836285 ToBeReleased 2023-08-01 2023-06-06T16:46:03.773Z 2023-06-08T05:55:14.893Z SUB12365647 T.34.30.3 Solanum lycopersicum SAMN35640740 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836282 ToBeReleased 2023-08-01 2023-06-06T16:46:03.803Z 2023-06-08T05:55:13.950Z SUB12365647 H.28.60.3 Solanum lycopersicum SAMN35640739 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836283 ToBeReleased 2023-08-01 2023-06-06T16:46:03.793Z 2023-06-08T05:55:12.846Z SUB12365647 H.28.60.2 Solanum lycopersicum SAMN35640738 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836284 ToBeReleased 2023-08-01 2023-06-06T16:46:03.783Z 2023-06-08T05:55:11.740Z SUB12365647 T.34.30.4 Solanum lycopersicum SAMN35640736 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836286 ToBeReleased 2023-08-01 2023-06-06T16:46:03.766Z 2023-06-08T05:55:10.670Z SUB12365647 T.34.30.1 Solanum lycopersicum SAMN35640706 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836287 ToBeReleased 2023-08-01 2023-06-06T16:46:03.483Z 2023-06-08T05:55:09.666Z SUB12365647 H.34.120.2 Solanum lycopersicum SAMN35640703 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836289 ToBeReleased 2023-08-01 2023-06-06T16:46:03.446Z 2023-06-08T05:55:08.736Z SUB12365647 H.28.120.2 Solanum lycopersicum SAMN35640735 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836288 ToBeReleased 2023-08-01 2023-06-06T16:46:03.756Z 2023-06-08T05:55:07.720Z SUB12365647 T.28.30.4 Solanum lycopersicum SAMN35640704 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836290 ToBeReleased 2023-08-01 2023-06-06T16:46:03.463Z 2023-06-08T05:55:06.710Z SUB12365647 H.28.120.3 Solanum lycopersicum SAMN35640713 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836291 ToBeReleased 2023-08-01 2023-06-06T16:46:03.550Z 2023-06-08T05:55:05.736Z SUB12365647 N.34.120.2 Solanum lycopersicum SAMN35640715 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836293 ToBeReleased 2023-08-01 2023-06-06T16:46:03.570Z 2023-06-08T05:55:04.826Z SUB12365647 T.28.120.2 Solanum lycopersicum SAMN35640714 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836292 ToBeReleased 2023-08-01 2023-06-06T16:46:03.560Z 2023-06-08T05:55:03.906Z SUB12365647 N.34.120.3 Solanum lycopersicum SAMN35640716 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836294 ToBeReleased 2023-08-01 2023-06-06T16:46:03.576Z 2023-06-08T05:55:02.933Z SUB12365647 T.28.120.3 Solanum lycopersicum SAMN35640717 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836295 ToBeReleased 2023-08-01 2023-06-06T16:46:03.586Z 2023-06-08T05:55:02.043Z SUB12365647 T.28.120.4 Solanum lycopersicum SAMN35640718 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836296 ToBeReleased 2023-08-01 2023-06-06T16:46:03.596Z 2023-06-08T05:55:01.143Z SUB12365647 T.34.120.2 Solanum lycopersicum SAMN35640754 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836298 ToBeReleased 2023-08-01 2023-06-06T16:46:03.940Z 2023-06-08T05:55:00.316Z SUB12365647 T.34.60.1 Solanum lycopersicum SAMN35640719 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836297 ToBeReleased 2023-08-01 2023-06-06T16:46:03.606Z 2023-06-08T05:54:59.393Z SUB12365647 T.34.120.3 Solanum lycopersicum SAMN35640753 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836299 ToBeReleased 2023-08-01 2023-06-06T16:46:03.930Z 2023-06-08T05:54:58.520Z SUB12365647 T.28.60.4 Solanum lycopersicum SAMN35640708 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836300 ToBeReleased 2023-08-01 2023-06-06T16:46:03.500Z 2023-06-08T05:54:57.596Z SUB12365647 H.34.120.4 Solanum lycopersicum SAMN35640752 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836301 ToBeReleased 2023-08-01 2023-06-06T16:46:03.920Z 2023-06-08T05:54:56.676Z SUB12365647 T.28.60.3 Solanum lycopersicum SAMN35640751 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836302 ToBeReleased 2023-08-01 2023-06-06T16:46:03.910Z 2023-06-08T05:54:55.750Z SUB12365647 T.28.60.1 Solanum lycopersicum SAMN35640750 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836303 ToBeReleased 2023-08-01 2023-06-06T16:46:03.896Z 2023-06-08T05:54:54.903Z SUB12365647 N.34.60.4 Solanum lycopersicum SAMN35640748 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836305 ToBeReleased 2023-08-01 2023-06-06T16:46:03.876Z 2023-06-08T05:54:53.896Z SUB12365647 N.34.60.1 Solanum lycopersicum SAMN35640749 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836304 ToBeReleased 2023-08-01 2023-06-06T16:46:03.886Z 2023-06-08T05:54:52.950Z SUB12365647 N.34.60.2 Solanum lycopersicum SAMN35640747 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836306 ToBeReleased 2023-08-01 2023-06-06T16:46:03.866Z 2023-06-08T05:54:52.066Z SUB12365647 N.28.60.4 Solanum lycopersicum SAMN35640746 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836307 ToBeReleased 2023-08-01 2023-06-06T16:46:03.860Z 2023-06-08T05:54:51.193Z SUB12365647 N.28.60.2 Solanum lycopersicum SAMN35640745 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836308 ToBeReleased 2023-08-01 2023-06-06T16:46:03.850Z 2023-06-08T05:54:50.180Z SUB12365647 N.28.60.1 Solanum lycopersicum SAMN35640744 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836309 ToBeReleased 2023-08-01 2023-06-06T16:46:03.840Z 2023-06-08T05:54:49.053Z SUB12365647 H.34.60.4 Solanum lycopersicum SAMN35640743 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836310 ToBeReleased 2023-08-01 2023-06-06T16:46:03.830Z 2023-06-08T05:54:47.683Z SUB12365647 H.34.60.3 Solanum lycopersicum SAMN35640707 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836311 ToBeReleased 2023-08-01 2023-06-06T16:46:03.493Z 2023-06-08T05:54:46.600Z SUB12365647 H.34.120.3 Solanum lycopersicum SAMN35640742 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836312 ToBeReleased 2023-08-01 2023-06-06T16:46:03.820Z 2023-06-08T05:54:45.646Z SUB12365647 H.34.60.2 Solanum lycopersicum SAMN35640741 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836313 ToBeReleased 2023-08-01 2023-06-06T16:46:03.813Z 2023-06-08T05:54:44.686Z SUB12365647 H.28.60.4 Solanum lycopersicum SAMN35640720 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836314 ToBeReleased 2023-08-01 2023-06-06T16:46:03.613Z 2023-06-08T05:54:43.566Z SUB12365647 T.34.120.4 Solanum lycopersicum SAMN35640705 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836317 ToBeReleased 2023-08-01 2023-06-06T16:46:03.473Z 2023-06-08T05:54:42.660Z SUB12365647 H.28.120.4 Solanum lycopersicum SAMN35640723 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836318 ToBeReleased 2023-08-01 2023-06-06T16:46:03.643Z 2023-06-08T05:54:41.813Z SUB12365647 H.28.30.4 Solanum lycopersicum SAMN35640721 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836315 ToBeReleased 2023-08-01 2023-06-06T16:46:03.623Z 2023-06-08T05:54:40.863Z SUB12365647 H.28.30.2 Solanum lycopersicum SAMN35640722 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836316 ToBeReleased 2023-08-01 2023-06-06T16:46:03.633Z 2023-06-08T05:54:39.793Z SUB12365647 H.28.30.3 Solanum lycopersicum SAMN35640726 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836321 ToBeReleased 2023-08-01 2023-06-06T16:46:03.670Z 2023-06-08T05:54:38.910Z SUB12365647 H.34.30.4 Solanum lycopersicum SAMN35640724 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836319 ToBeReleased 2023-08-01 2023-06-06T16:46:03.653Z 2023-06-08T05:54:38.053Z SUB12365647 H.34.30.2 Solanum lycopersicum SAMN35640725 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836320 ToBeReleased 2023-08-01 2023-06-06T16:46:03.663Z 2023-06-08T05:54:37.170Z SUB12365647 H.34.30.3 Solanum lycopersicum SAMN35640728 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836323 ToBeReleased 2023-08-01 2023-06-06T16:46:03.690Z 2023-06-08T05:54:36.256Z SUB12365647 N.28.30.2 Solanum lycopersicum SAMN35640727 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836322 ToBeReleased 2023-08-01 2023-06-06T16:46:03.680Z 2023-06-08T05:54:35.363Z SUB12365647 N.28.30.1 Solanum lycopersicum SAMN35640729 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836324 ToBeReleased 2023-08-01 2023-06-06T16:46:03.700Z 2023-06-08T05:54:34.506Z SUB12365647 N.28.30.4 Solanum lycopersicum SAMN35640732 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836327 ToBeReleased 2023-08-01 2023-06-06T16:46:03.726Z 2023-06-08T05:54:33.530Z SUB12365647 N.34.30.4 Solanum lycopersicum SAMN35640731 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836326 ToBeReleased 2023-08-01 2023-06-06T16:46:03.716Z 2023-06-08T05:54:32.606Z SUB12365647 N.34.30.2 Solanum lycopersicum SAMN35640730 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836325 ToBeReleased 2023-08-01 2023-06-06T16:46:03.710Z 2023-06-08T05:54:31.656Z SUB12365647 N.34.30.1 Solanum lycopersicum SAMN35640733 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836329 ToBeReleased 2023-08-01 2023-06-06T16:46:03.736Z 2023-06-08T05:54:30.606Z SUB12365647 T.28.30.1 Solanum lycopersicum SAMN35640734 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836328 ToBeReleased 2023-08-01 2023-06-06T16:46:03.746Z 2023-06-08T05:54:29.573Z SUB12365647 T.28.30.3 Solanum lycopersicum
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                robofjoy Robert Reid added a comment -

                The previous comment was a mess. So to see the table of Biosample IDs , SRA accesions, see the Google Drive version here:

                https://drive.google.com/file/d/1UcRQpRUcgNzrqu1K6ZkhaCd2fH5OZPnH/view?usp=drive_link

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                robofjoy Robert Reid added a comment - The previous comment was a mess. So to see the table of Biosample IDs , SRA accesions, see the Google Drive version here: https://drive.google.com/file/d/1UcRQpRUcgNzrqu1K6ZkhaCd2fH5OZPnH/view?usp=drive_link

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                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
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