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  1. IGB
  2. IGBF-3255

Submit MJ time course data to SRA

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 1 2023 May 15, Summer 2 2023 May 29

          Description

          Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

          For sample info, see Google Drive.

          Files related to this task will be in Google Drive here:

          https://drive.google.com/drive/folders/1wR-eyIiUvHTvw9LB67YkFnfaZU3qFgKO?usp=share_link

          Details:
          The Azenta Invoice / account ID = 30-771363348
          (in the event we even need to contact them related to this project)

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3254 Submit Johnson lab mature pollen and tomato seedling data to SRA

              • Major - Major loss of function.
              • Closed

                Activity

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                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 4 2023 Feb 21 [ 164 ] Spring 5 2023 Mar 6 [ 165 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6 [ 165 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20 [ 165, 166 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20 [ 165, 166 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10 [ 165, 166, 167 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10 [ 165, 166, 167 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24 [ 165, 166, 167, 168 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Description Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

                For sample info, see Google Drive.
                ann.loraine Ann Loraine made changes -
                Link This issue is blocked by IGBF-3254 [ IGBF-3254 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3254 [ IGBF-3254 ]
                ann.loraine Ann Loraine made changes -
                Link This issue is blocked by IGBF-3254 [ IGBF-3254 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24 [ 165, 166, 167, 168 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 8 [ 165, 166, 167, 168, 169 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ]
                Hide
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                robofjoy Robert Reid added a comment -

                Started the .tsv sheets needed for this.

                Have not started the official submission via NCBI. Can get a long ways through the process before needing to do so!

                Show
                robofjoy Robert Reid added a comment - Started the .tsv sheets needed for this. Have not started the official submission via NCBI. Can get a long ways through the process before needing to do so!
                Hide
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                ann.loraine Ann Loraine added a comment -

                Rob: Investigating whether we can identify the instrument using the fastq read name.
                Nowlan: Used the tracking number from the original quote to ask vender what the instrument was. Vender was able to look it up right away and provide an answer.

                Show
                ann.loraine Ann Loraine added a comment - Rob: Investigating whether we can identify the instrument using the fastq read name. Nowlan: Used the tracking number from the original quote to ask vender what the instrument was. Vender was able to look it up right away and provide an answer.
                Hide
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                robofjoy Robert Reid added a comment - - edited

                Refer to ticket 3254 for more insight on how we select some of the columns for the Biosample and SRA tabbed file.

                https://jira.bioviz.org/browse/IGBF-3254

                E.g., Instrument used:

                All Dr. Johnson’s experiments to date were run on a HiSeq 4000 or equivalent.
                For this particular experiment (30-614759823), your samples were sequenced on a HiSeq 4000.

                Please let us know if you have any questions.
                Best,
                Dafne Alves Winders, Ph.D.
                Assistant Manager | Next Generation Sequencing

                Show
                robofjoy Robert Reid added a comment - - edited Refer to ticket 3254 for more insight on how we select some of the columns for the Biosample and SRA tabbed file. https://jira.bioviz.org/browse/IGBF-3254 E.g., Instrument used: All Dr. Johnson’s experiments to date were run on a HiSeq 4000 or equivalent. For this particular experiment (30-614759823), your samples were sequenced on a HiSeq 4000. Please let us know if you have any questions. Best, Dafne Alves Winders, Ph.D. Assistant Manager | Next Generation Sequencing
                robofjoy Robert Reid made changes -
                Description Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

                For sample info, see Google Drive.
                		Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

                For sample info, see Google Drive.

                Files related to this task will be in Google Drive here:

                [https://drive.google.com/drive/folders/1wR-eyIiUvHTvw9LB67YkFnfaZU3qFgKO?usp=share_link]

                robofjoy Robert Reid made changes -
                Description Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

                For sample info, see Google Drive.

                Files related to this task will be in Google Drive here:

                [https://drive.google.com/drive/folders/1wR-eyIiUvHTvw9LB67YkFnfaZU3qFgKO?usp=share_link]

                		Under its own SRP accession, submit the Mark Johnson time course data to the Sequence Read Archive.

                For sample info, see Google Drive.

                Files related to this task will be in Google Drive here:

                [https://drive.google.com/drive/folders/1wR-eyIiUvHTvw9LB67YkFnfaZU3qFgKO?usp=share_link]

                Details:
                The Azenta Invoice / account ID = 30-771363348
                (in the event we even need to contact them related to this project)
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                Breakdown of the Expt composition:

                Time points (18 each for a total of 54)
                30
                60
                120

                Varieties (18 each for 54 total)
                Heinz
                Nagcarlang
                Tamaulipas

                or
                H
                N
                T

                Temp: 27 each for 45 total
                28C
                34C

                Replicates:
                This gets complicated. Reps are numbered 1,2,3 or 4.
                There are 3 replicates for each experiment.
                grep "34-" tmpID | wc -l
                27
                projects/tomato_genome/rnaseq/mark-2022-timeseries/30-771363348/00_fastq$ grep "4$" tmpID | wc -l
                16
                grep "3$" tmpID | wc -l
                14
                grep "2$" tmpID | wc -l
                14
                grep "1$"
                10
                This is not ideal but it is workable.

                Show
                robofjoy Robert Reid added a comment - Breakdown of the Expt composition: Time points (18 each for a total of 54) 30 60 120 Varieties (18 each for 54 total) Heinz Nagcarlang Tamaulipas or H N T Temp: 27 each for 45 total 28C 34C Replicates: This gets complicated. Reps are numbered 1,2,3 or 4. There are 3 replicates for each experiment. grep "34-" tmpID | wc -l 27 projects/tomato_genome/rnaseq/mark-2022-timeseries/30-771363348/00_fastq$ grep "4$" tmpID | wc -l 16 grep "3$" tmpID | wc -l 14 grep "2$" tmpID | wc -l 14 grep "1$" 10 This is not ideal but it is workable.
                Hide
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                robofjoy Robert Reid added a comment -

                ID's will look like this:

                H.34.120.2
                H.34.120.3
                H.34.120.4
                N.28.120.1
                N.28.120.2
                N.28.120.3
                N.34.120.1

                Variety.Temp.Time.Replicate

                Show
                robofjoy Robert Reid added a comment - ID's will look like this: H.34.120.2 H.34.120.3 H.34.120.4 N.28.120.1 N.28.120.2 N.28.120.3 N.34.120.1 Variety.Temp.Time.Replicate
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 1 [ 165, 166, 167, 168, 169 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 1 2023 May 15 [ 165, 166, 167, 168, 169, 170 ]
                Hide
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                robofjoy Robert Reid added a comment - - edited

                Things still to do:

                  1. Rework the Sample description / Title columns to match ID-
                  2. Determine which tissue type this is exactly! Search Google drive for evidence, and then ping Mark if nothing.-
                1. Check files for upload to ensure they are ready for FTP. (checked once already, checking again)
                2. Design description right now is same as OTHER study. This might require changes. Needs looking into.

                Once the pieces are resolved, I'll start the submission process.
                And will need review of 2 of the Google sheets for submission.

                Show
                robofjoy Robert Reid added a comment - - edited Things still to do: Rework the Sample description / Title columns to match ID- Determine which tissue type this is exactly! Search Google drive for evidence, and then ping Mark if nothing.- Check files for upload to ensure they are ready for FTP. (checked once already, checking again) Design description right now is same as OTHER study. This might require changes. Needs looking into. Once the pieces are resolved, I'll start the submission process. And will need review of 2 of the Google sheets for submission.
                Hide
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                robofjoy Robert Reid added a comment -

                Tissue = pollen tubes

                (for biosample sheet)

                Show
                robofjoy Robert Reid added a comment - Tissue = pollen tubes (for biosample sheet)
                Hide
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                robofjoy Robert Reid added a comment -

                FTP under way.

                Still need design description.

                Will add review of the .tsv files to the next sprint to ensure the sheets are correct!

                Table format and current entries are acceptable on the NCBI submission page.

                Show
                robofjoy Robert Reid added a comment - FTP under way. Still need design description. Will add review of the .tsv files to the next sprint to ensure the sheets are correct! Table format and current entries are acceptable on the NCBI submission page.
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Hide
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                robofjoy Robert Reid added a comment -

                Need for the 2 tables to be review like before.
                The tables are acceptable in the eyes of the NCBI SRA overlords, i.e., they will take them as currently formatted.

                Need to look that the description matches the title and matches the ID, using our naming convention.

                The BioSample table.
                Need to make sure desc matches ID. Replicate should match Id. temp and variety should match desc and ID.
                And sample title should match EVERYthing.

                https://docs.google.com/spreadsheets/d/1dN6_gTsA1LAS1jqn_OCGNXD-tdVWnJ8Sijc0VYxoAU0/edit?usp=sharing

                The SRA Table:

                Ignore the red column for now. That needs reworking. Otherwise checking the same things as above.

                https://docs.google.com/spreadsheets/d/18zUMInjKi3gDg_fYJxWYekECDYoyMoHY/edit?usp=sharing&ouid=100714234126361751017&rtpof=true&sd=true

                Show
                robofjoy Robert Reid added a comment - Need for the 2 tables to be review like before. The tables are acceptable in the eyes of the NCBI SRA overlords, i.e., they will take them as currently formatted. Need to look that the description matches the title and matches the ID, using our naming convention. The BioSample table. Need to make sure desc matches ID. Replicate should match Id. temp and variety should match desc and ID. And sample title should match EVERYthing. https://docs.google.com/spreadsheets/d/1dN6_gTsA1LAS1jqn_OCGNXD-tdVWnJ8Sijc0VYxoAU0/edit?usp=sharing The SRA Table: Ignore the red column for now. That needs reworking. Otherwise checking the same things as above. https://docs.google.com/spreadsheets/d/18zUMInjKi3gDg_fYJxWYekECDYoyMoHY/edit?usp=sharing&ouid=100714234126361751017&rtpof=true&sd=true
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 1 2023 May 15 [ 165, 166, 167, 168, 169, 170 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 1 2023 May 15, Summer 2 2023 May 29 [ 165, 166, 167, 168, 169, 170, 171 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
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                robofjoy Robert Reid added a comment -

                Design Description:

                The last piece needed for the SRA spreadsheet was the description. I wrote the desc and got approval from Mark yesterday to use the following:

                "For pollen tubes, RNA extraction process followed the Qiagen RNeasy protocol. RNA was quantified by nanodrop. Additional quality control was performed by Genewiz/Azenta before library preparation."

                The table has been updated and is now truly ready for review!

                Show
                robofjoy Robert Reid added a comment - Design Description: The last piece needed for the SRA spreadsheet was the description. I wrote the desc and got approval from Mark yesterday to use the following: "For pollen tubes, RNA extraction process followed the Qiagen RNeasy protocol. RNA was quantified by nanodrop. Additional quality control was performed by Genewiz/Azenta before library preparation." The table has been updated and is now truly ready for review!
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
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                Mdavis4290 Molly Davis added a comment -

                Review:

                Mark_TimeSeries_SRA_metadata: After reviewing each row everything matches up and looks great!

                SRA_BiosampleForm-Mark_TimeSeries: After reviewing each row everything matches up and also looks great!

                Nice job!

                Show
                Mdavis4290 Molly Davis added a comment - Review : Mark_TimeSeries_SRA_metadata : After reviewing each row everything matches up and looks great! SRA_BiosampleForm-Mark_TimeSeries : After reviewing each row everything matches up and also looks great! Nice job!
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Nowlan Freese [ nfreese ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
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                nfreese Nowlan Freese added a comment -

                Is the Replicate Number (BioSample Form) supposed to be exactly the same as the sample_name? Versus just being the replicate number (1, 2, 3...).

                The tissue (BioSample Form) and design_description (SRA_data) specifies pollen tubes (plural) whereas the title/sample_title/description specifies pollen tube (singular). Not sure if this matters (getting nit-picky). I would assume they are grouping multiple pollen tubes together per sample, so maybe they should all be tubes?

                Otherwise everything looks good to me.

                Show
                nfreese Nowlan Freese added a comment - Is the Replicate Number (BioSample Form) supposed to be exactly the same as the sample_name? Versus just being the replicate number (1, 2, 3...). The tissue (BioSample Form) and design_description (SRA_data) specifies pollen tubes (plural) whereas the title/sample_title/description specifies pollen tube (singular). Not sure if this matters (getting nit-picky). I would assume they are grouping multiple pollen tubes together per sample, so maybe they should all be tubes? Otherwise everything looks good to me.
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Robert Reid [ robertreid ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                robofjoy Robert Reid made changes -
                Attachment SRA_BiosampleForm-Mark_TimeSeries - Plant.1.0-final.tsv [ 17892 ]
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                robofjoy Robert Reid added a comment -

                2 weeks go by and all hell breaks loose.

                I had tested the .tsv Biosample file last week by uploading the file to the SRA submission page. It was acceptable once I changed the replicate column so that every entry was unique.
                I reloaded the same file today. No longer works. Baffling!!! New error!!
                Turns out that in the recent 2 week window that they have decided a NEW mandatory column is needed!!

                *collection_date

                I added this new column and added the year 2022. You can be more specific date wise but you do not have to be.
                So attached is the new .tsv sheet:

                SRA_BiosampleForm-Mark_TimeSeries - Plant.1.0-final.tsv

                The Google sheet above reflects the change as well.
                The SRA Gods have now been appeased with this latest offering and we are good to go.

                Show
                robofjoy Robert Reid added a comment - 2 weeks go by and all hell breaks loose. I had tested the .tsv Biosample file last week by uploading the file to the SRA submission page. It was acceptable once I changed the replicate column so that every entry was unique. I reloaded the same file today. No longer works. Baffling!!! New error!! Turns out that in the recent 2 week window that they have decided a NEW mandatory column is needed!! *collection_date I added this new column and added the year 2022. You can be more specific date wise but you do not have to be. So attached is the new .tsv sheet: SRA_BiosampleForm-Mark_TimeSeries - Plant.1.0-final.tsv The Google sheet above reflects the change as well. The SRA Gods have now been appeased with this latest offering and we are good to go.
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                There is a new template file on the SRA website that reflects the recent changes.
                I happen to ave their template file from 2 months ago and it does indeed appear to have just the *collection_date column added. Everything else is the same.

                Show
                robofjoy Robert Reid added a comment - There is a new template file on the SRA website that reflects the recent changes. I happen to ave their template file from 2 months ago and it does indeed appear to have just the *collection_date column added. Everything else is the same.
                Hide
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                robofjoy Robert Reid added a comment -

                BioProject ID: PRJNA980666

                Show
                robofjoy Robert Reid added a comment - BioProject ID: PRJNA980666
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                robofjoy Robert Reid made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                robofjoy Robert Reid made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                robofjoy Robert Reid made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                robofjoy Robert Reid made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                robofjoy Robert Reid made changes -
                Status Reviewing Pull Request [ 10303 ] Pull Request Submitted [ 10101 ]
                robofjoy Robert Reid made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                robofjoy Robert Reid made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                robofjoy Robert Reid made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                robofjoy Robert Reid made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
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                robofjoy Robert Reid added a comment -

                Accession Title BioProject SRA Status Release Date Created Updated Submission BioSample.name BioSample.organism_name
                SAMN35640756 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836276 ToBeReleased 2023-08-01 2023-06-06T16:46:03.960Z 2023-06-08T05:55:20.716Z SUB12365647 T.34.60.4 Solanum lycopersicum
                SAMN35640709 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 1 PRJNA980666 SRR24836281 ToBeReleased 2023-08-01 2023-06-06T16:46:03.510Z 2023-06-08T05:55:19.776Z SUB12365647 N.28.120.1 Solanum lycopersicum
                SAMN35640755 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836277 ToBeReleased 2023-08-01 2023-06-06T16:46:03.950Z 2023-06-08T05:55:18.843Z SUB12365647 T.34.60.3 Solanum lycopersicum
                SAMN35640711 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836279 ToBeReleased 2023-08-01 2023-06-06T16:46:03.530Z 2023-06-08T05:55:17.860Z SUB12365647 N.28.120.3 Solanum lycopersicum
                SAMN35640712 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 1 PRJNA980666 SRR24836278 ToBeReleased 2023-08-01 2023-06-06T16:46:03.540Z 2023-06-08T05:55:16.826Z SUB12365647 N.34.120.1 Solanum lycopersicum
                SAMN35640710 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836280 ToBeReleased 2023-08-01 2023-06-06T16:46:03.520Z 2023-06-08T05:55:15.903Z SUB12365647 N.28.120.2 Solanum lycopersicum
                SAMN35640737 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836285 ToBeReleased 2023-08-01 2023-06-06T16:46:03.773Z 2023-06-08T05:55:14.893Z SUB12365647 T.34.30.3 Solanum lycopersicum
                SAMN35640740 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836282 ToBeReleased 2023-08-01 2023-06-06T16:46:03.803Z 2023-06-08T05:55:13.950Z SUB12365647 H.28.60.3 Solanum lycopersicum
                SAMN35640739 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836283 ToBeReleased 2023-08-01 2023-06-06T16:46:03.793Z 2023-06-08T05:55:12.846Z SUB12365647 H.28.60.2 Solanum lycopersicum
                SAMN35640738 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836284 ToBeReleased 2023-08-01 2023-06-06T16:46:03.783Z 2023-06-08T05:55:11.740Z SUB12365647 T.34.30.4 Solanum lycopersicum
                SAMN35640736 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836286 ToBeReleased 2023-08-01 2023-06-06T16:46:03.766Z 2023-06-08T05:55:10.670Z SUB12365647 T.34.30.1 Solanum lycopersicum
                SAMN35640706 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836287 ToBeReleased 2023-08-01 2023-06-06T16:46:03.483Z 2023-06-08T05:55:09.666Z SUB12365647 H.34.120.2 Solanum lycopersicum
                SAMN35640703 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836289 ToBeReleased 2023-08-01 2023-06-06T16:46:03.446Z 2023-06-08T05:55:08.736Z SUB12365647 H.28.120.2 Solanum lycopersicum
                SAMN35640735 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836288 ToBeReleased 2023-08-01 2023-06-06T16:46:03.756Z 2023-06-08T05:55:07.720Z SUB12365647 T.28.30.4 Solanum lycopersicum
                SAMN35640704 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836290 ToBeReleased 2023-08-01 2023-06-06T16:46:03.463Z 2023-06-08T05:55:06.710Z SUB12365647 H.28.120.3 Solanum lycopersicum
                SAMN35640713 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836291 ToBeReleased 2023-08-01 2023-06-06T16:46:03.550Z 2023-06-08T05:55:05.736Z SUB12365647 N.34.120.2 Solanum lycopersicum
                SAMN35640715 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836293 ToBeReleased 2023-08-01 2023-06-06T16:46:03.570Z 2023-06-08T05:55:04.826Z SUB12365647 T.28.120.2 Solanum lycopersicum
                SAMN35640714 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836292 ToBeReleased 2023-08-01 2023-06-06T16:46:03.560Z 2023-06-08T05:55:03.906Z SUB12365647 N.34.120.3 Solanum lycopersicum
                SAMN35640716 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836294 ToBeReleased 2023-08-01 2023-06-06T16:46:03.576Z 2023-06-08T05:55:02.933Z SUB12365647 T.28.120.3 Solanum lycopersicum
                SAMN35640717 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836295 ToBeReleased 2023-08-01 2023-06-06T16:46:03.586Z 2023-06-08T05:55:02.043Z SUB12365647 T.28.120.4 Solanum lycopersicum
                SAMN35640718 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836296 ToBeReleased 2023-08-01 2023-06-06T16:46:03.596Z 2023-06-08T05:55:01.143Z SUB12365647 T.34.120.2 Solanum lycopersicum
                SAMN35640754 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836298 ToBeReleased 2023-08-01 2023-06-06T16:46:03.940Z 2023-06-08T05:55:00.316Z SUB12365647 T.34.60.1 Solanum lycopersicum
                SAMN35640719 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836297 ToBeReleased 2023-08-01 2023-06-06T16:46:03.606Z 2023-06-08T05:54:59.393Z SUB12365647 T.34.120.3 Solanum lycopersicum
                SAMN35640753 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836299 ToBeReleased 2023-08-01 2023-06-06T16:46:03.930Z 2023-06-08T05:54:58.520Z SUB12365647 T.28.60.4 Solanum lycopersicum
                SAMN35640708 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836300 ToBeReleased 2023-08-01 2023-06-06T16:46:03.500Z 2023-06-08T05:54:57.596Z SUB12365647 H.34.120.4 Solanum lycopersicum
                SAMN35640752 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836301 ToBeReleased 2023-08-01 2023-06-06T16:46:03.920Z 2023-06-08T05:54:56.676Z SUB12365647 T.28.60.3 Solanum lycopersicum
                SAMN35640751 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836302 ToBeReleased 2023-08-01 2023-06-06T16:46:03.910Z 2023-06-08T05:54:55.750Z SUB12365647 T.28.60.1 Solanum lycopersicum
                SAMN35640750 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836303 ToBeReleased 2023-08-01 2023-06-06T16:46:03.896Z 2023-06-08T05:54:54.903Z SUB12365647 N.34.60.4 Solanum lycopersicum
                SAMN35640748 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836305 ToBeReleased 2023-08-01 2023-06-06T16:46:03.876Z 2023-06-08T05:54:53.896Z SUB12365647 N.34.60.1 Solanum lycopersicum
                SAMN35640749 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836304 ToBeReleased 2023-08-01 2023-06-06T16:46:03.886Z 2023-06-08T05:54:52.950Z SUB12365647 N.34.60.2 Solanum lycopersicum
                SAMN35640747 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836306 ToBeReleased 2023-08-01 2023-06-06T16:46:03.866Z 2023-06-08T05:54:52.066Z SUB12365647 N.28.60.4 Solanum lycopersicum
                SAMN35640746 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836307 ToBeReleased 2023-08-01 2023-06-06T16:46:03.860Z 2023-06-08T05:54:51.193Z SUB12365647 N.28.60.2 Solanum lycopersicum
                SAMN35640745 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836308 ToBeReleased 2023-08-01 2023-06-06T16:46:03.850Z 2023-06-08T05:54:50.180Z SUB12365647 N.28.60.1 Solanum lycopersicum
                SAMN35640744 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836309 ToBeReleased 2023-08-01 2023-06-06T16:46:03.840Z 2023-06-08T05:54:49.053Z SUB12365647 H.34.60.4 Solanum lycopersicum
                SAMN35640743 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836310 ToBeReleased 2023-08-01 2023-06-06T16:46:03.830Z 2023-06-08T05:54:47.683Z SUB12365647 H.34.60.3 Solanum lycopersicum
                SAMN35640707 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836311 ToBeReleased 2023-08-01 2023-06-06T16:46:03.493Z 2023-06-08T05:54:46.600Z SUB12365647 H.34.120.3 Solanum lycopersicum
                SAMN35640742 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836312 ToBeReleased 2023-08-01 2023-06-06T16:46:03.820Z 2023-06-08T05:54:45.646Z SUB12365647 H.34.60.2 Solanum lycopersicum
                SAMN35640741 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836313 ToBeReleased 2023-08-01 2023-06-06T16:46:03.813Z 2023-06-08T05:54:44.686Z SUB12365647 H.28.60.4 Solanum lycopersicum
                SAMN35640720 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836314 ToBeReleased 2023-08-01 2023-06-06T16:46:03.613Z 2023-06-08T05:54:43.566Z SUB12365647 T.34.120.4 Solanum lycopersicum
                SAMN35640705 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836317 ToBeReleased 2023-08-01 2023-06-06T16:46:03.473Z 2023-06-08T05:54:42.660Z SUB12365647 H.28.120.4 Solanum lycopersicum
                SAMN35640723 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836318 ToBeReleased 2023-08-01 2023-06-06T16:46:03.643Z 2023-06-08T05:54:41.813Z SUB12365647 H.28.30.4 Solanum lycopersicum
                SAMN35640721 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836315 ToBeReleased 2023-08-01 2023-06-06T16:46:03.623Z 2023-06-08T05:54:40.863Z SUB12365647 H.28.30.2 Solanum lycopersicum
                SAMN35640722 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836316 ToBeReleased 2023-08-01 2023-06-06T16:46:03.633Z 2023-06-08T05:54:39.793Z SUB12365647 H.28.30.3 Solanum lycopersicum
                SAMN35640726 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836321 ToBeReleased 2023-08-01 2023-06-06T16:46:03.670Z 2023-06-08T05:54:38.910Z SUB12365647 H.34.30.4 Solanum lycopersicum
                SAMN35640724 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836319 ToBeReleased 2023-08-01 2023-06-06T16:46:03.653Z 2023-06-08T05:54:38.053Z SUB12365647 H.34.30.2 Solanum lycopersicum
                SAMN35640725 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836320 ToBeReleased 2023-08-01 2023-06-06T16:46:03.663Z 2023-06-08T05:54:37.170Z SUB12365647 H.34.30.3 Solanum lycopersicum
                SAMN35640728 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836323 ToBeReleased 2023-08-01 2023-06-06T16:46:03.690Z 2023-06-08T05:54:36.256Z SUB12365647 N.28.30.2 Solanum lycopersicum
                SAMN35640727 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836322 ToBeReleased 2023-08-01 2023-06-06T16:46:03.680Z 2023-06-08T05:54:35.363Z SUB12365647 N.28.30.1 Solanum lycopersicum
                SAMN35640729 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836324 ToBeReleased 2023-08-01 2023-06-06T16:46:03.700Z 2023-06-08T05:54:34.506Z SUB12365647 N.28.30.4 Solanum lycopersicum
                SAMN35640732 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836327 ToBeReleased 2023-08-01 2023-06-06T16:46:03.726Z 2023-06-08T05:54:33.530Z SUB12365647 N.34.30.4 Solanum lycopersicum
                SAMN35640731 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836326 ToBeReleased 2023-08-01 2023-06-06T16:46:03.716Z 2023-06-08T05:54:32.606Z SUB12365647 N.34.30.2 Solanum lycopersicum
                SAMN35640730 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836325 ToBeReleased 2023-08-01 2023-06-06T16:46:03.710Z 2023-06-08T05:54:31.656Z SUB12365647 N.34.30.1 Solanum lycopersicum
                SAMN35640733 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836329 ToBeReleased 2023-08-01 2023-06-06T16:46:03.736Z 2023-06-08T05:54:30.606Z SUB12365647 T.28.30.1 Solanum lycopersicum
                SAMN35640734 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836328 ToBeReleased 2023-08-01 2023-06-06T16:46:03.746Z 2023-06-08T05:54:29.573Z SUB12365647 T.28.30.3 Solanum lycopersicum

                Show
                robofjoy Robert Reid added a comment - Accession Title BioProject SRA Status Release Date Created Updated Submission BioSample.name BioSample.organism_name SAMN35640756 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836276 ToBeReleased 2023-08-01 2023-06-06T16:46:03.960Z 2023-06-08T05:55:20.716Z SUB12365647 T.34.60.4 Solanum lycopersicum SAMN35640709 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 1 PRJNA980666 SRR24836281 ToBeReleased 2023-08-01 2023-06-06T16:46:03.510Z 2023-06-08T05:55:19.776Z SUB12365647 N.28.120.1 Solanum lycopersicum SAMN35640755 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836277 ToBeReleased 2023-08-01 2023-06-06T16:46:03.950Z 2023-06-08T05:55:18.843Z SUB12365647 T.34.60.3 Solanum lycopersicum SAMN35640711 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836279 ToBeReleased 2023-08-01 2023-06-06T16:46:03.530Z 2023-06-08T05:55:17.860Z SUB12365647 N.28.120.3 Solanum lycopersicum SAMN35640712 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 1 PRJNA980666 SRR24836278 ToBeReleased 2023-08-01 2023-06-06T16:46:03.540Z 2023-06-08T05:55:16.826Z SUB12365647 N.34.120.1 Solanum lycopersicum SAMN35640710 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836280 ToBeReleased 2023-08-01 2023-06-06T16:46:03.520Z 2023-06-08T05:55:15.903Z SUB12365647 N.28.120.2 Solanum lycopersicum SAMN35640737 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836285 ToBeReleased 2023-08-01 2023-06-06T16:46:03.773Z 2023-06-08T05:55:14.893Z SUB12365647 T.34.30.3 Solanum lycopersicum SAMN35640740 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836282 ToBeReleased 2023-08-01 2023-06-06T16:46:03.803Z 2023-06-08T05:55:13.950Z SUB12365647 H.28.60.3 Solanum lycopersicum SAMN35640739 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836283 ToBeReleased 2023-08-01 2023-06-06T16:46:03.793Z 2023-06-08T05:55:12.846Z SUB12365647 H.28.60.2 Solanum lycopersicum SAMN35640738 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836284 ToBeReleased 2023-08-01 2023-06-06T16:46:03.783Z 2023-06-08T05:55:11.740Z SUB12365647 T.34.30.4 Solanum lycopersicum SAMN35640736 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836286 ToBeReleased 2023-08-01 2023-06-06T16:46:03.766Z 2023-06-08T05:55:10.670Z SUB12365647 T.34.30.1 Solanum lycopersicum SAMN35640706 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836287 ToBeReleased 2023-08-01 2023-06-06T16:46:03.483Z 2023-06-08T05:55:09.666Z SUB12365647 H.34.120.2 Solanum lycopersicum SAMN35640703 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836289 ToBeReleased 2023-08-01 2023-06-06T16:46:03.446Z 2023-06-08T05:55:08.736Z SUB12365647 H.28.120.2 Solanum lycopersicum SAMN35640735 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836288 ToBeReleased 2023-08-01 2023-06-06T16:46:03.756Z 2023-06-08T05:55:07.720Z SUB12365647 T.28.30.4 Solanum lycopersicum SAMN35640704 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836290 ToBeReleased 2023-08-01 2023-06-06T16:46:03.463Z 2023-06-08T05:55:06.710Z SUB12365647 H.28.120.3 Solanum lycopersicum SAMN35640713 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836291 ToBeReleased 2023-08-01 2023-06-06T16:46:03.550Z 2023-06-08T05:55:05.736Z SUB12365647 N.34.120.2 Solanum lycopersicum SAMN35640715 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 2 PRJNA980666 SRR24836293 ToBeReleased 2023-08-01 2023-06-06T16:46:03.570Z 2023-06-08T05:55:04.826Z SUB12365647 T.28.120.2 Solanum lycopersicum SAMN35640714 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836292 ToBeReleased 2023-08-01 2023-06-06T16:46:03.560Z 2023-06-08T05:55:03.906Z SUB12365647 N.34.120.3 Solanum lycopersicum SAMN35640716 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 3 PRJNA980666 SRR24836294 ToBeReleased 2023-08-01 2023-06-06T16:46:03.576Z 2023-06-08T05:55:02.933Z SUB12365647 T.28.120.3 Solanum lycopersicum SAMN35640717 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836295 ToBeReleased 2023-08-01 2023-06-06T16:46:03.586Z 2023-06-08T05:55:02.043Z SUB12365647 T.28.120.4 Solanum lycopersicum SAMN35640718 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 2 PRJNA980666 SRR24836296 ToBeReleased 2023-08-01 2023-06-06T16:46:03.596Z 2023-06-08T05:55:01.143Z SUB12365647 T.34.120.2 Solanum lycopersicum SAMN35640754 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836298 ToBeReleased 2023-08-01 2023-06-06T16:46:03.940Z 2023-06-08T05:55:00.316Z SUB12365647 T.34.60.1 Solanum lycopersicum SAMN35640719 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836297 ToBeReleased 2023-08-01 2023-06-06T16:46:03.606Z 2023-06-08T05:54:59.393Z SUB12365647 T.34.120.3 Solanum lycopersicum SAMN35640753 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836299 ToBeReleased 2023-08-01 2023-06-06T16:46:03.930Z 2023-06-08T05:54:58.520Z SUB12365647 T.28.60.4 Solanum lycopersicum SAMN35640708 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836300 ToBeReleased 2023-08-01 2023-06-06T16:46:03.500Z 2023-06-08T05:54:57.596Z SUB12365647 H.34.120.4 Solanum lycopersicum SAMN35640752 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 3 PRJNA980666 SRR24836301 ToBeReleased 2023-08-01 2023-06-06T16:46:03.920Z 2023-06-08T05:54:56.676Z SUB12365647 T.28.60.3 Solanum lycopersicum SAMN35640751 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836302 ToBeReleased 2023-08-01 2023-06-06T16:46:03.910Z 2023-06-08T05:54:55.750Z SUB12365647 T.28.60.1 Solanum lycopersicum SAMN35640750 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836303 ToBeReleased 2023-08-01 2023-06-06T16:46:03.896Z 2023-06-08T05:54:54.903Z SUB12365647 N.34.60.4 Solanum lycopersicum SAMN35640748 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 1 PRJNA980666 SRR24836305 ToBeReleased 2023-08-01 2023-06-06T16:46:03.876Z 2023-06-08T05:54:53.896Z SUB12365647 N.34.60.1 Solanum lycopersicum SAMN35640749 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836304 ToBeReleased 2023-08-01 2023-06-06T16:46:03.886Z 2023-06-08T05:54:52.950Z SUB12365647 N.34.60.2 Solanum lycopersicum SAMN35640747 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836306 ToBeReleased 2023-08-01 2023-06-06T16:46:03.866Z 2023-06-08T05:54:52.066Z SUB12365647 N.28.60.4 Solanum lycopersicum SAMN35640746 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 2 PRJNA980666 SRR24836307 ToBeReleased 2023-08-01 2023-06-06T16:46:03.860Z 2023-06-08T05:54:51.193Z SUB12365647 N.28.60.2 Solanum lycopersicum SAMN35640745 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 60 minutes, replicate 1 PRJNA980666 SRR24836308 ToBeReleased 2023-08-01 2023-06-06T16:46:03.850Z 2023-06-08T05:54:50.180Z SUB12365647 N.28.60.1 Solanum lycopersicum SAMN35640744 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 4 PRJNA980666 SRR24836309 ToBeReleased 2023-08-01 2023-06-06T16:46:03.840Z 2023-06-08T05:54:49.053Z SUB12365647 H.34.60.4 Solanum lycopersicum SAMN35640743 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 3 PRJNA980666 SRR24836310 ToBeReleased 2023-08-01 2023-06-06T16:46:03.830Z 2023-06-08T05:54:47.683Z SUB12365647 H.34.60.3 Solanum lycopersicum SAMN35640707 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 120 minutes, replicate 3 PRJNA980666 SRR24836311 ToBeReleased 2023-08-01 2023-06-06T16:46:03.493Z 2023-06-08T05:54:46.600Z SUB12365647 H.34.120.3 Solanum lycopersicum SAMN35640742 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 60 minutes, replicate 2 PRJNA980666 SRR24836312 ToBeReleased 2023-08-01 2023-06-06T16:46:03.820Z 2023-06-08T05:54:45.646Z SUB12365647 H.34.60.2 Solanum lycopersicum SAMN35640741 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 60 minutes, replicate 4 PRJNA980666 SRR24836313 ToBeReleased 2023-08-01 2023-06-06T16:46:03.813Z 2023-06-08T05:54:44.686Z SUB12365647 H.28.60.4 Solanum lycopersicum SAMN35640720 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 34C, 120 minutes, replicate 4 PRJNA980666 SRR24836314 ToBeReleased 2023-08-01 2023-06-06T16:46:03.613Z 2023-06-08T05:54:43.566Z SUB12365647 T.34.120.4 Solanum lycopersicum SAMN35640705 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 120 minutes, replicate 4 PRJNA980666 SRR24836317 ToBeReleased 2023-08-01 2023-06-06T16:46:03.473Z 2023-06-08T05:54:42.660Z SUB12365647 H.28.120.4 Solanum lycopersicum SAMN35640723 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836318 ToBeReleased 2023-08-01 2023-06-06T16:46:03.643Z 2023-06-08T05:54:41.813Z SUB12365647 H.28.30.4 Solanum lycopersicum SAMN35640721 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836315 ToBeReleased 2023-08-01 2023-06-06T16:46:03.623Z 2023-06-08T05:54:40.863Z SUB12365647 H.28.30.2 Solanum lycopersicum SAMN35640722 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836316 ToBeReleased 2023-08-01 2023-06-06T16:46:03.633Z 2023-06-08T05:54:39.793Z SUB12365647 H.28.30.3 Solanum lycopersicum SAMN35640726 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836321 ToBeReleased 2023-08-01 2023-06-06T16:46:03.670Z 2023-06-08T05:54:38.910Z SUB12365647 H.34.30.4 Solanum lycopersicum SAMN35640724 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836319 ToBeReleased 2023-08-01 2023-06-06T16:46:03.653Z 2023-06-08T05:54:38.053Z SUB12365647 H.34.30.2 Solanum lycopersicum SAMN35640725 RNA-Seq of Solanum lycopersicum pollen tube: Heinz, 34C, 30 minutes, replicate 3 PRJNA980666 SRR24836320 ToBeReleased 2023-08-01 2023-06-06T16:46:03.663Z 2023-06-08T05:54:37.170Z SUB12365647 H.34.30.3 Solanum lycopersicum SAMN35640728 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 2 PRJNA980666 SRR24836323 ToBeReleased 2023-08-01 2023-06-06T16:46:03.690Z 2023-06-08T05:54:36.256Z SUB12365647 N.28.30.2 Solanum lycopersicum SAMN35640727 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836322 ToBeReleased 2023-08-01 2023-06-06T16:46:03.680Z 2023-06-08T05:54:35.363Z SUB12365647 N.28.30.1 Solanum lycopersicum SAMN35640729 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 28C, 30 minutes, replicate 4 PRJNA980666 SRR24836324 ToBeReleased 2023-08-01 2023-06-06T16:46:03.700Z 2023-06-08T05:54:34.506Z SUB12365647 N.28.30.4 Solanum lycopersicum SAMN35640732 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 4 PRJNA980666 SRR24836327 ToBeReleased 2023-08-01 2023-06-06T16:46:03.726Z 2023-06-08T05:54:33.530Z SUB12365647 N.34.30.4 Solanum lycopersicum SAMN35640731 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 2 PRJNA980666 SRR24836326 ToBeReleased 2023-08-01 2023-06-06T16:46:03.716Z 2023-06-08T05:54:32.606Z SUB12365647 N.34.30.2 Solanum lycopersicum SAMN35640730 RNA-Seq of Solanum lycopersicum pollen tube: Nagcarlang, 34C, 30 minutes, replicate 1 PRJNA980666 SRR24836325 ToBeReleased 2023-08-01 2023-06-06T16:46:03.710Z 2023-06-08T05:54:31.656Z SUB12365647 N.34.30.1 Solanum lycopersicum SAMN35640733 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 1 PRJNA980666 SRR24836329 ToBeReleased 2023-08-01 2023-06-06T16:46:03.736Z 2023-06-08T05:54:30.606Z SUB12365647 T.28.30.1 Solanum lycopersicum SAMN35640734 RNA-Seq of Solanum lycopersicum pollen tube: Taumalipas, 28C, 30 minutes, replicate 3 PRJNA980666 SRR24836328 ToBeReleased 2023-08-01 2023-06-06T16:46:03.746Z 2023-06-08T05:54:29.573Z SUB12365647 T.28.30.3 Solanum lycopersicum
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                robofjoy Robert Reid added a comment -

                The previous comment was a mess. So to see the table of Biosample IDs , SRA accesions, see the Google Drive version here:

                https://drive.google.com/file/d/1UcRQpRUcgNzrqu1K6ZkhaCd2fH5OZPnH/view?usp=drive_link

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                robofjoy Robert Reid added a comment - The previous comment was a mess. So to see the table of Biosample IDs , SRA accesions, see the Google Drive version here: https://drive.google.com/file/d/1UcRQpRUcgNzrqu1K6ZkhaCd2fH5OZPnH/view?usp=drive_link

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                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    ann.loraine Ann Loraine
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                      Updated:
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