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  1. IGB
  2. IGBF-325

enable filtering by bit flag and other propertes on BAM files

    Details

    • Type: Improvement
    • Status: To-Do (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      1.5

      Description

      When users right-click a track and select "filter by", a window opens offering options to filter (hide) data based on their properties.

      Currently, the list of properties/attributes available for BAM tracks is very limited.

      We need a way to filter based on other attributes, including:

      Whether the read is first or second in a pair.
      Whether the read's mate is mapped to another chromosome (e.g., mate start is -1)

        Attachments

          Activity

          ann.loraine Ann Loraine created issue -
          mason Mason Meyer (Inactive) made changes -
          Field Original Value New Value
          Epic Link IGBF-440 [ 15498 ]
          mason Mason Meyer (Inactive) made changes -
          Rank Ranked lower
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Description When users right-click a track and select "filter by", a window opens offering options to filter (hide) data based on their properties.

          Currently, the list of properties/attributes available for BAM tracks is very limited.

          We need a way to filter based on other attributes, including:

          Whether the read is first or second in a pair.
          Whether the read's mate is mapped to another chromosome (e.g., mate start is -1)
          And more.

          Let's implement this as a minor release for 8.2.

          When users right-click a track and select "filter by", a window opens offering options to filter (hide) data based on their properties.

          Currently, the list of properties/attributes available for BAM tracks is very limited.

          We need a way to filter based on other attributes, including:

          Whether the read is first or second in a pair.
          Whether the read's mate is mapped to another chromosome (e.g., mate start is -1)


          ann.loraine Ann Loraine made changes -
          Epic Link IGBF-440 [ 15498 ]
          ann.loraine Ann Loraine made changes -
          Workflow Loraine Lab Workflow [ 15571 ] Fall 2019 Workflow Update [ 18732 ]
          ann.loraine Ann Loraine made changes -
          Workflow Fall 2019 Workflow Update [ 18732 ] Revised Fall 2019 Workflow Update [ 20854 ]
          Status Open [ 1 ] To-Do [ 10305 ]

            People

            • Assignee:
              dcnorris David Norris (Inactive)
              Reporter:
              ann.loraine Ann Loraine
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              Dates

              • Created:
                Updated: