Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 5 2023 Mar 6, Spring 6 2023 Mar 20
Description
The count file being used is in the results folder of muday-144-analysis:
../muday-144-analysis/results/muday-144-SL5_counts-salmon.txt
The R markdowns and Functions.R script in the DESeq_analysis folder need to be changed to the following so the file is read.csv into R from the correct file location:
"../results/muday-144-SL5_counts-salmon.txt"
Attachments
Activity
Code changes are fine. Functional review to happen in another ticket.
Moving to "Ready for Pull Request" for [~molly] to submit a PR to main branch in team repository when ready.
I made a new fork to clean up merges:
https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/
Branch: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/branch/IGBF-3294
Submit PR when ready.
Please rebase the branch on team repository's main branch.
attn: [~molly]
Thank you for all your work!
Rebase IGBF-3294 to top of main: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/commits/
git checkout IGBF-3294 git rebase main git push --force origin IGBF-3294
Branch: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/branch/IGBF-3294
Pull Request: https://bitbucket.org/hotpollen/flavonoid-rnaseq/pull-requests/10
[~aloraine]
Merged. Changes are great. Moving to Done.
Edited markdowns and Functions.R files to reference correct counts input file. The .Rproj file was also edited to the correct location in the repo.
Branch: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/branch/IGBF-3294