Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 5 2023 Mar 6, Spring 6 2023 Mar 20
Description
The count file being used is in the results folder of muday-144-analysis:
../muday-144-analysis/results/muday-144-SL5_counts-salmon.txt
The R markdowns and Functions.R script in the DESeq_analysis folder need to be changed to the following so the file is read.csv into R from the correct file location:
"../results/muday-144-SL5_counts-salmon.txt"
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Assignee | Ann Loraine [ aloraine ] |
| Summary | Fix Markdowns and Functions.R Directories | Edit Markdowns and Functions.R to reference counts input file |
| Sprint | Spring 5 2023 Mar 6 [ 165 ] | Spring 5 2023 Mar 6, Spring 6 2023 Mar 20 [ 165, 166 ] |
| Rank | Ranked higher |
| Story Points | 0.25 | 0.5 |
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Code changes are fine. Functional review to happen in another ticket.
Moving to "Ready for Pull Request" for [~molly] to submit a PR to main branch in team repository when ready.
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
I made a new fork to clean up merges:
https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/
Branch: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/branch/IGBF-3294
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Submit PR when ready.
Please rebase the branch on team repository's main branch.
attn: [~molly]
Thank you for all your work!
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Molly Davis [ molly ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Rebase IGBF-3294 to top of main: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/commits/
git checkout IGBF-3294 git rebase main git push --force origin IGBF-3294
Branch: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/branch/IGBF-3294
Pull Request: https://bitbucket.org/hotpollen/flavonoid-rnaseq/pull-requests/10
[~aloraine]
| Assignee | Molly Davis [ molly ] |
Merged. Changes are great. Moving to Done.
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Molly Davis [ molly ] |
Edited markdowns and Functions.R files to reference correct counts input file. The .Rproj file was also edited to the correct location in the repo.
Branch: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/branch/IGBF-3294