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  1. IGB
  2. IGBF-3294

Edit Markdowns and Functions.R to reference counts input file

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          The count file being used is in the results folder of muday-144-analysis:
          ../muday-144-analysis/results/muday-144-SL5_counts-salmon.txt

          The R markdowns and Functions.R script in the DESeq_analysis folder need to be changed to the following so the file is read.csv into R from the correct file location:
          "../results/muday-144-SL5_counts-salmon.txt"

            Attachments

              Activity

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              Mdavis4290 Molly Davis created issue -
              Mdavis4290 Molly Davis made changes -
              Field Original Value New Value
              Epic Link IGBF-3277 [ 22158 ]
              Mdavis4290 Molly Davis made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Summary Fix Markdowns and Functions.R Directories Edit Markdowns and Functions.R to reference counts input file
              ann.loraine Ann Loraine made changes -
              Sprint Spring 5 2023 Mar 6 [ 165 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20 [ 165, 166 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Story Points 0.25 0.5
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Mdavis4290 Molly Davis made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Mdavis4290 Molly Davis made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Assignee Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ann.loraine Ann Loraine made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Assignee Molly Davis [ molly ]

                People

                • Assignee:
                  Mdavis4290 Molly Davis
                  Reporter:
                  Mdavis4290 Molly Davis
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                  Dates

                  • Created:
                    Updated:
                    Resolved: