Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 8 2023 Apr 24
Description
Suggestions for improvement - to make the image look nicer:
Pick some pretty colors to distinguish protein-coding genes (e.g., KanR, F3H) from the other features. Currently, all the features have the same color (RGB code 0,0,255). If you do that, then we can make a very nice visualization by turning on the "Color by RGB" feature in the track.
Copy the values from field 14 into field 13.
You can curate field 14 a bit more, by judiciously copying over some of the text annotations from each feature in the original GenBank file.
Find the bed file in bitbucket: https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/ExternalDataSets/pK7WG2-F3H-OX3.bed
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Link | This issue blocks IGBF-3306 [ IGBF-3306 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Description |
Suggestions for improvement - to make the image look nicer:
Pick some pretty colors to distinguish protein-coding genes (e.g., KanR, F3H) from the other features. Currently, all the features have the same color (RGB code 0,0,255). If you do that, then we can make a very nice visualization by turning on the "Color by RGB" feature in the track. Copy the values from field 14 into field 13. You can curate field 14 a bit more, by judiciously copying over some of the text annotations from each feature in the original GenBank file. Find the bed file in ticket IGBF-3306 |
Suggestions for improvement - to make the image look nicer:
Pick some pretty colors to distinguish protein-coding genes (e.g., KanR, F3H) from the other features. Currently, all the features have the same color (RGB code 0,0,255). If you do that, then we can make a very nice visualization by turning on the "Color by RGB" feature in the track. Copy the values from field 14 into field 13. You can curate field 14 a bit more, by judiciously copying over some of the text annotations from each feature in the original GenBank file. Find the bed file in bitbucket: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/ExternalDataSets/pK7WG2-F3H-OX3.bed |
| Description |
Suggestions for improvement - to make the image look nicer:
Pick some pretty colors to distinguish protein-coding genes (e.g., KanR, F3H) from the other features. Currently, all the features have the same color (RGB code 0,0,255). If you do that, then we can make a very nice visualization by turning on the "Color by RGB" feature in the track. Copy the values from field 14 into field 13. You can curate field 14 a bit more, by judiciously copying over some of the text annotations from each feature in the original GenBank file. Find the bed file in bitbucket: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/ExternalDataSets/pK7WG2-F3H-OX3.bed |
Suggestions for improvement - to make the image look nicer:
Pick some pretty colors to distinguish protein-coding genes (e.g., KanR, F3H) from the other features. Currently, all the features have the same color (RGB code 0,0,255). If you do that, then we can make a very nice visualization by turning on the "Color by RGB" feature in the track. Copy the values from field 14 into field 13. You can curate field 14 a bit more, by judiciously copying over some of the text annotations from each feature in the original GenBank file. Find the bed file in bitbucket: https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/ExternalDataSets/pK7WG2-F3H-OX3.bed |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Attachment | pK7WG-F3H-4.png [ 17859 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |