[IGBF-3326] Create KP 2023 sample sheet needed for Quickload site and more - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
3.5
Epic Link:
Process and deploy Palanivelu Lab data
Sprint:
Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 2 2023 May 29, Summer 3 2023 June 12

Description

Original Directory: /projects/tomato_genome/rnaseq/30-804059537-kelsie
Nf-core run: /nobackup/tomato_genome/30-804059537-KP (kp for "Kelsey Pryze")

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Attachments

Sequenced Samples.xlsx
53 kB
06/Jun/23 9:49 AM

Issue Links

relates to

IGBF-3251 Process and deploy Palanivelu Lab data

To-Do

IGBF-3324 Generate junction files Kelsey's Palanivelu Lab 2023

Closed

IGBF-3325 Copy KP 2023 data (30-804059537) to IGB Quickload host for visualization in IGB

Closed

IGBF-3328 Add KP 2023 multiqc report and sample CSV file to bitbucket

Closed

IGBF-3338 Add and test KP 2023 sample sheet data to "hotpollen" annots.xml

Closed

IGBF-3323 Generate scaled coverage graphs Kelsey's Palanivelu Lab 2023

Closed

IGBF-3329 Create and test SRP371294 sample sheet spreadsheet for adding data to "hotpollen" annots.xml

To-Do

Show 2 more links (2 relates to)

Activity

Ascending order - Click to sort in descending order

Molly Davis created issue - 24/Apr/23 10:58 AM

Molly Davis made changes - 24/Apr/23 10:58 AM

Field	Original Value	New Value
Epic Link		IGBF-3251 [ 22132 ]

Molly Davis made changes - 24/Apr/23 10:58 AM

Link

This issue blocks ~~IGBF-3323~~ [ ~~IGBF-3323~~ ]

Molly Davis made changes - 24/Apr/23 10:58 AM

Link

This issue blocks ~~IGBF-3324~~ [ ~~IGBF-3324~~ ]

Molly Davis made changes - 24/Apr/23 10:58 AM

Link

This issue blocks ~~IGBF-3325~~ [ ~~IGBF-3325~~ ]

Molly Davis made changes - 24/Apr/23 12:32 PM

Link

This issue blocks ~~IGBF-3323~~ [ ~~IGBF-3323~~ ]

Molly Davis made changes - 24/Apr/23 12:33 PM

Link

This issue relates to ~~IGBF-3323~~ [ ~~IGBF-3323~~ ]

Molly Davis made changes - 24/Apr/23 12:34 PM

Link

This issue blocks ~~IGBF-3324~~ [ ~~IGBF-3324~~ ]

Molly Davis made changes - 24/Apr/23 12:34 PM

Link

This issue blocks ~~IGBF-3325~~ [ ~~IGBF-3325~~ ]

Molly Davis made changes - 24/Apr/23 12:36 PM

Link

This issue relates to ~~IGBF-3324~~ [ ~~IGBF-3324~~ ]

Molly Davis made changes - 24/Apr/23 12:36 PM

Link

This issue relates to ~~IGBF-3328~~ [ ~~IGBF-3328~~ ]

Molly Davis made changes - 24/Apr/23 12:36 PM

Link

This issue relates to ~~IGBF-3325~~ [ ~~IGBF-3325~~ ]

Molly Davis made changes - 24/Apr/23 12:36 PM

Link

This issue relates to IGBF-3251 [ IGBF-3251 ]

Ann Loraine made changes - 01/May/23 10:48 AM

Sprint

Spring 8 2023 Apr 24 [ 168 ]

Spring 8 2023 Apr 24, Spring 9 2023 May 8 [ 168, 169 ]

Ann Loraine made changes - 01/May/23 10:48 AM

Rank

Ranked higher

Molly Davis made changes - 01/May/23 3:55 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 01/May/23 4:20 PM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 01/May/23 4:20 PM

Story Points

Ann Loraine made changes - 02/May/23 10:03 AM

Comment

[ test ]

Molly Davis made changes - 02/May/23 3:58 PM

Attachment

KP_sample_sheet.xlsx [ 17868 ]

Molly Davis made changes - 02/May/23 3:59 PM

Attachment

Draft1_KP_sample_sheet.xlsx [ 17869 ]

Molly Davis made changes - 02/May/23 4:00 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 02/May/23 4:00 PM

Assignee

Molly Davis [ molly ]

Ann Loraine [ aloraine ]

Ann Loraine made changes - 03/May/23 10:11 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 03/May/23 10:12 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 03/May/23 10:12 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 03/May/23 12:04 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 03/May/23 12:04 PM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

Ann Loraine made changes - 03/May/23 12:04 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 03/May/23 12:04 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 03/May/23 12:05 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 03/May/23 12:05 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 03/May/23 12:05 PM

Status

First Level Review in Progress [ 10301 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 03/May/23 12:05 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 04/May/23 4:07 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 04/May/23 4:07 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 05/May/23 9:39 AM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

Ann Loraine made changes - 05/May/23 9:39 AM

Assignee

Ann Loraine [ aloraine ]

Molly Davis [ molly ]

Molly Davis made changes - 05/May/23 9:58 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 08/May/23 9:22 AM

Link

This issue relates to IGBF-3329 [ IGBF-3329 ]

Molly Davis made changes - 08/May/23 1:51 PM

Attachment

KP_sample_sheet.xlsx [ 17875 ]

Molly Davis made changes - 08/May/23 1:52 PM

Attachment

KP_sample_sheet.xlsx [ 17868 ]

Molly Davis made changes - 08/May/23 1:53 PM

Attachment

KP_sample_sheet.xlsx [ 17875 ]

Molly Davis made changes - 08/May/23 1:54 PM

Attachment

KP_sample_sheet.xlsx [ 17876 ]

Molly Davis made changes - 08/May/23 1:56 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 08/May/23 1:56 PM

Assignee

Molly Davis [ molly ]

Ann Loraine made changes - 09/May/23 7:44 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 09/May/23 7:44 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 09/May/23 7:50 AM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

Ann Loraine made changes - 09/May/23 7:51 AM

Assignee

Ann Loraine [ aloraine ]

Molly Davis [ molly ]

Molly Davis made changes - 09/May/23 9:35 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 09/May/23 9:35 AM

Attachment

Draft1_KP_sample_sheet.xlsx [ 17869 ]

Molly Davis made changes - 09/May/23 9:35 AM

Attachment

KP_sample_sheet.xlsx [ 17876 ]

Molly Davis made changes - 09/May/23 9:35 AM

Attachment

KP_sample_sheet.xlsx [ 17877 ]

Molly Davis made changes - 09/May/23 9:35 AM

Comment

[ *Final Draft*:
[^KP_sample_sheet.xlsx]

Note: Every time I convert the file to excel it removes the freeze on the header row. ]

Molly Davis made changes - 09/May/23 9:37 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 09/May/23 9:37 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 09/May/23 9:57 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 09/May/23 9:57 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Ann Loraine made changes - 09/May/23 9:58 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 09/May/23 10:30 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 09/May/23 10:30 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Ann Loraine made changes - 09/May/23 1:46 PM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 09/May/23 1:46 PM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Ann Loraine made changes - 11/May/23 8:34 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Ann Loraine made changes - 11/May/23 8:34 AM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

Ann Loraine made changes - 11/May/23 8:34 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 15/May/23 10:20 AM

Link

This issue relates to ~~IGBF-3338~~ [ ~~IGBF-3338~~ ]

Ann Loraine made changes - 25/May/23 10:41 AM

Summary

Create samples Excel spreadsheet needed to create annots.xml for Quickload site

Create samples Excel spreadsheet needed for Quickload site and more

Ann Loraine made changes - 25/May/23 10:41 AM

Attachment

KP_sample_sheet.xlsx [ 17877 ]

Ann Loraine made changes - 25/May/23 11:04 AM

Resolution	Done [ 10000 ]
Status	Closed [ 6 ]	To-Do [ 10305 ]

Ann Loraine made changes - 25/May/23 11:04 AM

Sprint

Spring 8 2023 Apr 24, Spring 9 2023 May 1 [ 168, 169 ]

Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 2 2023 May 29 [ 168, 169, 171 ]

Ann Loraine made changes - 30/May/23 10:45 AM

Story Points

3.5

Molly Davis made changes - 05/Jun/23 3:44 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Robert Reid made changes - 06/Jun/23 9:49 AM

Attachment

Sequenced Samples.xlsx [ 17890 ]

Molly Davis made changes - 06/Jun/23 10:00 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Ann Loraine made changes - 12/Jun/23 11:14 AM

Sprint

Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 2 2023 May 29 [ 168, 169, 171 ]

Spring 8 2023 Apr 24, Spring 9 2023 May 1, Summer 2 2023 May 29, Summer 3 2023 June 12 [ 168, 169, 171, 172 ]

Ann Loraine made changes - 12/Jun/23 11:14 AM

Rank

Ranked higher

Molly Davis made changes - 13/Jun/23 3:38 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 14/Jun/23 4:20 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 14/Jun/23 4:20 PM

Assignee

Molly Davis [ molly ]

Ann Loraine [ aloraine ]

Molly Davis made changes - 14/Jun/23 4:21 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 14/Jun/23 6:10 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 14/Jun/23 6:10 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 14/Jun/23 6:41 PM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Molly Davis made changes - 15/Jun/23 9:53 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Molly Davis made changes - 15/Jun/23 9:53 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Molly Davis made changes - 15/Jun/23 9:53 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 15/Jun/23 9:53 AM

Assignee

Ann Loraine [ aloraine ]

Molly Davis [ molly ]

Molly Davis made changes - 15/Jun/23 10:28 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Molly Davis made changes - 15/Jun/23 10:28 AM

Status

Post-merge Testing In Progress [ 10003 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 15/Jun/23 10:41 AM

Link

This issue relates to IGBF-3366 [ IGBF-3366 ]

Molly Davis made changes - 15/Jun/23 10:47 AM

Link

This issue relates to IGBF-3367 [ IGBF-3367 ]

Molly Davis made changes - 15/Jun/23 10:53 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Molly Davis made changes - 15/Jun/23 11:28 AM

Assignee

Molly Davis [ molly ]

Ann Loraine [ aloraine ]

Molly Davis made changes - 15/Jun/23 11:30 AM

Status

Post-merge Testing In Progress [ 10003 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 16/Jun/23 8:37 AM

Assignee

Ann Loraine [ aloraine ]

Molly Davis [ molly ]

Molly Davis made changes - 16/Jun/23 8:37 AM

Assignee

Molly Davis [ molly ]

Ann Loraine [ aloraine ]

Ann Loraine made changes - 16/Jun/23 10:33 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 16/Jun/23 10:33 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Ann Loraine made changes - 16/Jun/23 10:33 AM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

Molly Davis made changes - 27/Jul/23 4:30 PM

Description

Directory: /nobackup/tomato_genome/30-804059537-KP (kp for "Kelsey Pryze")

(Molly - first draft & Ann - final draft)

*Original Directory*: /nobackup/tomato_genome/30-804059537-KP (kp for "Kelsey Pryze")
Nf-core run:

Molly Davis made changes - 27/Jul/23 4:31 PM

Description

*Original Directory*: /nobackup/tomato_genome/30-804059537-KP (kp for "Kelsey Pryze")
Nf-core run:

*Original Directory*: /projects/tomato_genome/rnaseq/30-804059537-kelsie
*Nf-core run*: /nobackup/tomato_genome/30-804059537-KP (kp for "Kelsey Pryze")

Molly Davis made changes - 27/Jul/23 4:32 PM

Summary

Create samples Excel spreadsheet needed for Quickload site and more

Create KP 2023 samples sheet needed for Quickload site and more

Molly Davis made changes - 27/Jul/23 4:33 PM

Summary

Create KP 2023 samples sheet needed for Quickload site and more

Create KP 2023 sample sheet needed for Quickload site and more

People

Assignee:

Unassigned

Reporter:

Molly Davis

Votes:

0 Vote for this issue

Watchers:

3 Start watching this issue

Dates

Created:

24/Apr/23 10:58 AM

Updated:

27/Jul/23 4:33 PM

Resolved:

16/Jun/23 10:33 AM