Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:4
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Epic Link:
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Sprint:Spring 9 2023 May 1
Description
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muday lab.
- https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf
- https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf
Draft email:
Hello Muday Lab, Great news! We finished renaming samples using your spreadsheet and checked them using MDS plots. Here are the reports: * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Note: In above links, click three dots and choose "open raw" to download above PDFs and open them on your computer for review. Thank you! :-)
Attachments
Issue Links
- relates to
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Description |
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muddy lab.
* https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Draft email: {code:java} Hi Muday Lab, We are ready to review sample renaming for gene annotations and MDS plots. Let us know a time you would like to have a meeting and go over these files. The links to the files are here (click "open raw" after clicking the three dots to get the latest version): * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Thank you! {code} |
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muddy lab.
* https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Draft email: {code:java} Hello Muday Lab, Great news! We are ready to review sample renaming for gene annotations and MDS plots. Let us know a time you would like to have a meeting and go over these files. The links to the files are here (click "open raw" after clicking the three dots to get the latest version): * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Thank you! :-) {code} |
| Description |
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muddy lab.
* https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Draft email: {code:java} Hello Muday Lab, Great news! We are ready to review sample renaming for gene annotations and MDS plots. Let us know a time you would like to have a meeting and go over these files. The links to the files are here (click "open raw" after clicking the three dots to get the latest version): * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Thank you! :-) {code} |
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muddy lab.
* https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Draft email: {code:java} Hello Muday Lab, Great news! We finished renaming samples using your spreadsheet and checked them using MDS plots. Here are the reports: * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Note: In above links, click three dots and choose "open raw" to download above PDFs and open them on your computer for review. Thank you! :-) {code} |
| Description |
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muddy lab.
* https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Draft email: {code:java} Hello Muday Lab, Great news! We finished renaming samples using your spreadsheet and checked them using MDS plots. Here are the reports: * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Note: In above links, click three dots and choose "open raw" to download above PDFs and open them on your computer for review. Thank you! :-) {code} |
Review Markdowns AddGeneAnnotations.pdf and MakeMdsPlots.pdf with muday lab.
* https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Draft email: {code:java} Hello Muday Lab, Great news! We finished renaming samples using your spreadsheet and checked them using MDS plots. Here are the reports: * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/AddGeneAnnotations.pdf * https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeMdsPlots.pdf Note: In above links, click three dots and choose "open raw" to download above PDFs and open them on your computer for review. Thank you! :-) {code} |
Email sent! Waiting for response.
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Molly Davis [ molly ] |
| Summary | Review relabeled samples with Muday lab | Notify relabeled samples with Muday lab |
| Summary | Notify relabeled samples with Muday lab | Notify Muday lab about relabeled samples |
Gloria Muday's Response:
Molly and Ann, Thanks for these plots. These plots warm our hearts as it is so clear now that the data is logically grouping now the samples are linked to the appropriate names!!! Thanks to you all for all you have done to ID the sample problems and now highlight the sample strengths! Gloria
Email thread: Emails-Questions about sample labeling Salmon and IGB files.rtf
| Attachment | Emails-Questions about sample labeling Salmon and IGB files.rtf [ 17874 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Molly Davis [ molly ] |
I made some edits. Please send to Muday lab when ready.
attn: [~molly]