Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 3 2023 June 12, Summer 4 2023 June 26, Summer 5 2023 July 10
Description
- Add labels
- Square figure
- Make all axis' the same length
- Circle clusters
- Improve markdown with in-line R coding
Note: some of these requests were changed due to not visually working.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Improve PCA plots by adding labels and squaring figure | Revise PCA plot markdown |
| Description |
* Add labels
* Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding |
| Description |
* Add labels
* Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding |
| Description |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding Gloria Muday requests: Your PCA plot is great. The one thing that is not clear is the Genotype. Could you put a different color outline around each symbol to indicate the genotype (or something like that already in the software? So OE3 purple, are green, and VF36 black? (Also could you make the 34 degree temperature red (since blue is low and red is high, is a theme we often use!). |
| Description |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding Gloria Muday requests: Your PCA plot is great. The one thing that is not clear is the Genotype. Could you put a different color outline around each symbol to indicate the genotype (or something like that already in the software? So OE3 purple, are green, and VF36 black? (Also could you make the 34 degree temperature red (since blue is low and red is high, is a theme we often use!). |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding |
| Attachment | Muday-144-PCA-Plots.pdf [ 17905 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Sprint | Summer 3 2023 June 12 [ 172 ] | Summer 3 2023 June 12, Summer 4 2023 June 26 [ 172, 173 ] |
| Rank | Ranked higher |
| Description |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding |
Markdown: https://bitbucket.org/mdavis4290/molly-flavonoid-rnaseq/src/main/72_F3H_PollenTube/DESeq_analysis/DESeq-Clusters.Rmd
* Add labels * Square figure * Make all axis' the same length * Circle clusters * Improve markdown with in-line R coding Note: some of these requests were changed due to not visually working. |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Sprint | Summer 3 2023 June 12, Summer 4 2023 June 26 [ 172, 173 ] | Summer 3 2023 June 12, Summer 4 2023 June 26, Summer 5 2023 July 10 [ 172, 173, 174 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Molly Davis [ molly ] |