Removed:

• org.lorainelab.igb.remote.services.discovery.provider.configured
• org.lorainelab.igb.remote.services.topology.manager
• org.lorainelab.igb.remote.services.distribution.provider.http

I built IGB using mvn clean install, no errors observed.
I ran IGB with no errors observed.
I installed and used an app from the IGB App Manager (Geometric Mean Graph Operator) without issue.
All bundles active in the felix web console (http://localhost:7080/system/console/bundles)

It seems like remote services were part of an attempt to remotely log user errors - see IGBF-1072. It is unclear if this was working in a production manner, i.e., were we ever collecting these logs, or was this only ever demonstrated?

https://bitbucket.org/lorainelab/integrated-genome-browser/commits/bb107dbbd29e45081f062e821c7e8ecbe32c9b36
https://bitbucket.org/lorainelab/integrated-genome-browser/commits/9cd9ab1173368f42711c53978ad4464caea65253
https://bitbucket.org/lorainelab/integrated-genome-browser/commits/d1bda3625bcf0eb057a7e788edef3572d6a81e5a

Looking at this commit, it appears there were a lot of dependencies added for this remote logging. Can many/all of these be removed if we are not using the remote logging?

Removed:

• org.apache.felix.gogo.runtime
• org.apache.felix.gogo.shell
• org.apache.felix.gogo.command

All bundles active, no errors in IGB.

Branch: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-3382

I've removed a number of dependencies related to the remote error logging discussed in IGBF-1072 and in this commit. IGB appears to be running normally, though additional testing is needed. It may be possible to remove additional dependencies.

It looks like part of the error reporting was commented out in IGBF-2056 in this commit.

Branch: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-3382

I have commented out the org.lorainelab.igb.error.reporter.manager module in the project pom. The org.lorainelab.igb.error.reporter.manager code is still within IGB, but should not build as the module has been commented out. Dependencies have been removed from the project/main/shared poms, as well as version variables.

I have squashed commits and rebased onto main-JDK8. Everything in IGB seems to be working.

To test,

1. Fetch my branch IGBF-3382 (my bitbucket account is out of pipeline minutes).
2. Build IGB (mvn clean install)
3. Start IGB, look for any errors in the log.
4. Launch the App Manager (Plug-ins tab) in IGB, check that you can install an app
5. Open a genome and load some data, i.e. check that IGB appears to be functioning correctly in a general sense
6. In a web browser, go to http://localhost:7080/system/console/bundles and check to see that all bundles are active and that no bundles are listed as installed or fragments.

Fetched IGBF-3382 and tested basic functionalities, all bundles are in resolved state and logs are clean. it is good to go.

Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/935

Merged. Main branch installers are built and deployed to bioviz.org and the team repository downloads section.

Testing:

• Installed the main-JDK8 branch, downloaded from the "early access" section of the Web site.
• IGB launched as expected.
• Loaded latest human genome by clicking the Mona Lisa image on the home screen
• Open the felix Web console and entered user name admin password admin to view the installed bundles
• Observed that all bundles have "Status" of "active"
• Observed there were no errors in the Consle

Moving to Done.