Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7
Description
Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
- Run nextflow for SL4 &SL5
- create sample CSV
- Check Mulitqc report for strandedness
- Commit multiqc reports and sample.csv (Ravi_sample_2022.csv)
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3251 [ 22132 ] |
| Link | This issue relates to IGBF-3367 [ IGBF-3367 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Run Nextflow with 2022 Palanavelu Lab-generated samples | Run Nextflow with 2022 Palanivelu Lab-generated samples |
| Description |
Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
Nf-core run: /nobackup/tomato_genome/ravi-55/sl5-nfcore/results # but there are no scaled or junction files. * Nextflow SL4 & SL5 have already been created with nf-core * Should I rerun? * Need to commit multiqc reports? |
Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
* Run nextflow for SL4 &SL5 * create sample CSV * Check Mulitqc report for strandedness * Commit multiqc reports |
| Description |
Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
* Run nextflow for SL4 &SL5 * create sample CSV * Check Mulitqc report for strandedness * Commit multiqc reports |
Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
* Run nextflow for SL4 &SL5 * create sample CSV * Check Mulitqc report for strandedness * Commit multiqc reports and sample.csv (Ravi_sample_2022.csv) |
| Sprint | Summer 5 2023 July 10 [ 174 ] | Summer 5 2023 July 10, Summer 6 2023 July 24 [ 174, 175 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Summer 5 2023 July 10, Summer 6 2023 July 24 [ 174, 175 ] | Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 174, 175, 176 ] |
| Rank | Ranked higher |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |