Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3392

Make sample sheet for 2022 Palanivelu

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Original Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
          Nf-core run: /nobackup/tomato_genome/Ravi_2022

          • Make a new sample sheet for this 2022 experiment/data

          Notes:
          Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3390 Run Nextflow with 2022 Palanivelu Lab-generated samples

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3391 Create scaled and junction files for 2022 Palanivelu Lab-generated samples

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment -

                I have finished creating the sample sheet. Next step is to commit the file after 2022 nextflow multiqc reports and csv file are merged.

                Show
                Mdavis4290 Molly Davis added a comment - I have finished creating the sample sheet. Next step is to commit the file after 2022 nextflow multiqc reports and csv file are merged.
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment -

                Branch: https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3392

                Show
                Mdavis4290 Molly Davis added a comment - Branch : https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3392
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Looks great. Thanks [~molly]!

                Show
                ann.loraine Ann Loraine added a comment - Looks great. Thanks [~molly] !
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment - - edited

                Pull request: https://bitbucket.org/hotpollen/pistil-rna-seq/pull-requests/8

                Of course! Thank you!

                Show
                Mdavis4290 Molly Davis added a comment - - edited Pull request : https://bitbucket.org/hotpollen/pistil-rna-seq/pull-requests/8 Of course! Thank you!
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Made multiple edits to the 2022 sample sheet, including:

                • Added azenta identifier
                • Changed "deploy dir" to azenta identifier
                • Changed study name

                Began deploying data to IGB Quickload host. Copied data with:

                root@cci-vm12:/mnt/igbdata/hotpollen/S_lycopersicum_Jun_2022# rsync -avzhP aloraine@10.16.115.244:/projects/tomato_genome/fnb/dataprocessing/Ravi_2022/for_quickload/S_lycopersicum_Jun_2022/30-681594536/ 30-681594536
Connected.
                Show
                ann.loraine Ann Loraine added a comment - Made multiple edits to the 2022 sample sheet, including: Added azenta identifier Changed "deploy dir" to azenta identifier Changed study name Began deploying data to IGB Quickload host. Copied data with: root@cci-vm12:/mnt/igbdata/hotpollen/S_lycopersicum_Jun_2022# rsync -avzhP aloraine@10.16.115.244:/projects/tomato_genome/fnb/dataprocessing/Ravi_2022/for_quickload/S_lycopersicum_Jun_2022/30-681594536/ 30-681594536 Connected.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    Mdavis4290 Molly Davis
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: