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  1. IGB
  2. IGBF-3392

Make sample sheet for 2022 Palanivelu

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Original Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
          Nf-core run: /nobackup/tomato_genome/Ravi_2022

          • Make a new sample sheet for this 2022 experiment/data

          Notes:
          Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3390 Run Nextflow with 2022 Palanivelu Lab-generated samples

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3391 Create scaled and junction files for 2022 Palanivelu Lab-generated samples

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                Mdavis4290 Molly Davis created issue -
                Mdavis4290 Molly Davis made changes -
                Field Original Value New Value
                Epic Link IGBF-3251 [ 22132 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3367 [ IGBF-3367 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3390 [ IGBF-3390 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3391 [ IGBF-3391 ]
                Mdavis4290 Molly Davis made changes -
                Summary Add 2022 Palanavelu to sample sheet and run XML script Make sample sheet 2022 Palanivelu to sample sheet and run XML script
                Mdavis4290 Molly Davis made changes -
                Summary Make sample sheet 2022 Palanivelu to sample sheet and run XML script Make sample sheet for 2022 Palanivelu and run XML script
                Mdavis4290 Molly Davis made changes -
                Sprint Summer 5 2023 July 10 [ 174 ] Summer 6 2023 July 24 [ 175 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Summary Make sample sheet for 2022 Palanivelu and run XML script Make sample sheet for 2022 Palanivelu
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Description Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
                Nf-core run: /nobackup/tomato_genome/ravi-55/sl5-nfcore/results # but there are no scaled or junction files.

                * Add files to KP_sample_sheet.xlsx
                * Run "makeAnnotsXml.py" after merge

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"                 		Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
                Nf-core run: /nobackup/tomato_genome/ravi-55/sl5-nfcore/results # but there are no scaled or junction files.

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"
                Mdavis4290 Molly Davis made changes -
                Description Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
                Nf-core run: /nobackup/tomato_genome/ravi-55/sl5-nfcore/results # but there are no scaled or junction files.

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"                 		Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"
                Mdavis4290 Molly Davis made changes -
                Description Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"                 		Original Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
                Nf-core run: /nobackup/tomato_genome/Ravi_2022

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"
                Mdavis4290 Molly Davis made changes -
                Description Original Directory: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
                Nf-core run: /nobackup/tomato_genome/Ravi_2022

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"                 		*Original Directory*: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq
                *Nf-core run*: /nobackup/tomato_genome/Ravi_2022

                * Make a new sample sheet for this 2022 experiment/data

                Notes:
                Study_name column: /projects/tomato_genome/rnaseq/ravi-2022-fullrun/30-681594536/00_fastq could be: "Hz Mal Nag Tam heat-treated unpollinated pistils RP Lab"
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 6 2023 July 24 [ 175 ] Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 175, 176 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 175, 176 ] Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 175, 176, 177 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    Mdavis4290 Molly Davis
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: