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  1. IGB
  2. IGBF-3409

Fix wheat genome files and documentation

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          This directory:

          http://lorainelab-quickload.scidas.org/quickload/T_aestivum_Aug_2018/

          contains a ".csi" file instead of a ".tbi" file.

          Not clear why. Investigate and fix.

          Also, modify the "annots.xml" to point IGB to a sequence file stored at EBI or wherever it is.

          After doing this, update HEADER.md in the quickload svn repository to no longer advise users to retrieve and deploy the wheat genome file.

            Attachments

              Issue Links

              relates to

              New Feature - A new feature of the product, which has yet to be developed. IGBF-2538 Support CSI tabix index for very large genomes

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-2333 Add wheat genome to IGB quickload system

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                pkulzer Paige Kulzer made changes -
                Field Original Value New Value
                Assignee Ann Loraine [ aloraine ] Paige Kulzer [ pkulzer ]
                pkulzer Paige Kulzer made changes -
                Epic Link IGBF-1395 [ 17470 ]
                pkulzer Paige Kulzer made changes -
                Sprint Spring 1 [ 210 ]
                pkulzer Paige Kulzer made changes -
                Story Points 0.25 1.25
                pkulzer Paige Kulzer made changes -
                Story Points 1.25 0.25
                pkulzer Paige Kulzer made changes -
                Issue Type Task [ 3 ] Updated Genome [ 11 ]
                pkulzer Paige Kulzer made changes -
                Issue Type Updated Genome [ 11 ] Task [ 3 ]
                pkulzer Paige Kulzer made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                pkulzer Paige Kulzer made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                pkulzer Paige Kulzer made changes -
                Assignee Paige Kulzer [ pkulzer ]
                pkulzer Paige Kulzer made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 1 [ 210 ] Spring 1, Spring 2 [ 210, 211 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 1, Spring 2 [ 210, 211 ] Spring 1, Spring 2, Spring 3 [ 210, 211, 212 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Summary Fix wheat genome files Fix wheat genome files and documentation
                ann.loraine Ann Loraine made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-2333 [ IGBF-2333 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-2538 [ IGBF-2538 ]
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-1395 [ 17470 ] IGBF-1765 [ 17855 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 1, Spring 2, Spring 3 [ 210, 211, 212 ] Spring 1, Spring 2 [ 210, 211 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated: