Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.6 Major Release
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Labels:
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Story Points:2
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Epic Link:
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Sprint:Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun, Summer 1: 8 Jun - 19 Jun, Summer 2: 22 Jun - 3 Jul, Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct
Description
We received a request to wheat genome to IGB Quickload.
Attachments
Issue Links
- relates to
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IGBF-2541 Add wheat genome image to genome dashboard
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- Closed
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HELP-337 Add wheat genome to IGB
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- To-Do
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IGBF-2538 Support CSI tabix index for very large genomes
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- To-Do
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IGBF-2548 Investigate: Why do wheat gene models fail to load
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- Closed
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IGBF-2538 Support CSI tabix index for very large genomes
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- To-Do
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Bread wheat genome
Int Wheat Genome Sequencing Consortium https://www.wheatgenome.org/News/Latest-news/All-IWGSC-data-related-to-the-reference-sequence-of-bread-wheat-IWGSC-RefSeq-v1.0-publicly-available-at-URGI
https://plants.ensembl.org/Triticum_aestivum/Info/Index
(These links are all for the RefSeq v1.0 version, which is most widely accepted and used today in the community)
Only last week released T4 genome (but based on the IWGSC work):
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA392179
https://www.biorxiv.org/content/10.1101/2020.04.06.028746v1.full.pdf
Durum wheat genome
https://www.interomics.eu/durum-wheat-genome
http://plants.ensembl.org/Triticum_turgidum/Info/Index
wheat training (Small summary from our group about the wheat genome assemblies) http://www.wheat-training.com/wp-content/uploads/Genomic_resources/pdfs/Genome_assemblies.pdf