Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Fall 1 - Sep 5, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17, Fall 3 2023 Oct 2, Fall 4 2023 Oct 16
Description
To make IGB-3406 and IGB-3347 less confusing,
we need to separate these 2 studies, that are currently contained under the same bioProject ID:
PRJNA980666
Rob will email the SRA and make the request.
The end goal is to have 2 Bioprojects (or 2 SRP study numbers).
And have new updated titles and abstracts that better reflect what is happening in these studies.
Attachments
Activity
All samples moved !!
There are 72 samples.
Here are all the SRA IDs. This will be needed for the next ticket!
SRR25478240
SRR25478241
SRR25478242
SRR25478243
SRR25478244
SRR25478245
SRR25478246
SRR25478247
SRR25478248
SRR25478249
SRR25478250
SRR25478251
SRR25478252
SRR25478253
SRR25478254
SRR25478255
SRR25478256
SRR25478257
SRR25478258
SRR25478259
SRR25478260
SRR25478261
SRR25478262
SRR25478263
SRR25478264
SRR25478265
SRR25478266
SRR25478267
SRR25478268
SRR25478269
SRR25478270
SRR25478271
SRR25478272
SRR25478273
SRR25478274
SRR25478275
SRR25478276
SRR25478277
SRR25478278
SRR25478279
SRR25478280
SRR25478281
SRR25478282
SRR25478283
SRR25478284
SRR25478285
SRR25478286
SRR25478287
SRR25478288
SRR25478289
SRR25478290
SRR25478291
SRR25478292
SRR25478293
SRR25478294
SRR25478295
SRR25478296
SRR25478297
SRR25478298
SRR25478299
SRR25478300
SRR25478301
SRR25478302
SRR25478303
SRR25478304
SRR25478305
SRR25478306
SRR25478307
SRR25478308
SRR25478309
SRR25478310
SRR25478311
The next task will be to confirm that these SRA accessions are all in order and good.
New task to come...............
Updating the Mark Johnson BioProject to more accurately reflect the dataset contained therein.
My draft version:
TITLE:
TOMATO PISTIL TUBES DURING GERMINATION AND TUBE ELONGATION UNDER ACUTE HEAT STRESS OVER A SHORT TIME COURSE
Other details can be found in the Google Doc:
https://docs.google.com/document/d/1_nkCRl62umA_LAB_yrzPuko-9GSXV8BHKkWEvKY0KA0/edit?usp=sharing
Will send to Mark and his people for edits and improvements. This gives them something to start with.
I'll update the Bioproject once I get feedback from them.
Having not heard back from the Johnson lab, I will reach out again.
And in the meantime, I will go ahead and make the changes I proposed above to Mark's Bioproject so that we can move this task along!
I am calling this closed. a new title and abstract are now in place.
https://dataview.ncbi.nlm.nih.gov/object/PRJNA980666
I can make future edits as needed, in the event I hear back from mark.
R
Gerat news!
We can simply generate a 2nd BioProject. And then point the Muday files to this new BioProject!
See email below.
Yes, you can register a new BioProject here:
https://submit.ncbi.nlm.nih.gov/subs/bioproject/
Once the new BioProject is registered you can link this BioProject to the appropriate Run from submission portal's manage data view:
https://dataview.ncbi.nlm.nih.gov/object/PRJNA980666?limit=200
You can also edit the PRJNA980666 study title from this page if necessary.
Best,
Rick Lapoint
SRA Curator