Details
-
Type:
Improvement
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: 10.0.0 Major Release
-
Labels:None
-
Story Points:3
-
Epic Link:
-
Sprint:Fall 1 - Sep 5, Fall 2 2023 Sep 17
Description
Now that all declarative services in IGB has been migrated to osgi.annotations as of IGBF-3414, the next step to migrate the project J11 requires maven-bundleplugin to be updated.
Attachments
Issue Links
Activity
I have rebased 3431 onto main-JDK8 for testing. I can find no issues when running my branch through the jar file, all bundles are listed as active in the felix web console. However, when I run the branch through the debugger in Netbeans, the org.osgi.service.component.annotations bundle is listed as installed. Version 1.3 of org.osgi.service.component.annotations must be set to provided (possibly also compile) as it cannot be set to runtime. This may be what is causing the bundle to be listed as installed in debug mode, but I am not sure. However, I have been using debug mode extensively, and have come across no issues. Apps install and run normally, and all other IGB functionality appears to be working.
I suggest that we merge IGBF-3431 with main-JDK8-r6. It may be possible to resolve/fix the issue with version 1.3 of org.osgi.service.component.annotations in the future, but at this time everything in IGB appears to be working, and this will allow us to proceed with the Java 11 work.
After including these changes in main-JDK8-r6, I tested it with no errors.
[~aloraine] - Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/949
Tested using main-JDK8.dmg installer on Mac. IGB installed and ran correctly.
Closing ticket.
Updating maven-bundle-plugin from version 3.0.0 to version 4.0.0 (latest update being 5.1.9, Mar 2023), bundles with <Service-Component>*<Service-Component> in the pom file required that this line to be removed because using * has deprecated. However, updating it to 4.2.1 has no problems except for runtime issues same as updating to 5.1.9. These errors seem to becaused by an unresolved requirement of osgi.component in genometry.