Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Fall 4 2023 Oct 16
Description
Repository pistil-rna-seq lacks "counts" files for data set 30-681594536 even though multiqc_report and _samples.csv files are present.
For this task, add these two files to pistil-rna-seq/ExternalData:
using naming convention:
[data set]_[assembly]_salmon.merged.gene_counts.tsv
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3446 [ 22548 ] |
| Description |
Repository pistil-rna-seq lacks "counts" files for data set 30-605730043 even though multiqc_report and _samples.csv files are present.
For this task, add these two files to pistil-rna-seq/ExternalData: 30-605730043_SL4_salmon.merged.gene_counts.tsv 30-605730043_SL5_salmon.merged.gene_counts.tsv using naming convention: [data set]_[assembly]_salmon.merged.gene_counts.tsv |
| Description |
Repository pistil-rna-seq lacks "counts" files for data set 30-605730043 even though multiqc_report and _samples.csv files are present.
For this task, add these two files to pistil-rna-seq/ExternalData: 30-605730043_SL4_salmon.merged.gene_counts.tsv 30-605730043_SL5_salmon.merged.gene_counts.tsv using naming convention: [data set]_[assembly]_salmon.merged.gene_counts.tsv |
Repository pistil-rna-seq lacks "counts" files for data set 30-681594536 even though multiqc_report and _samples.csv files are present.
For this task, add these two files to pistil-rna-seq/ExternalData: using naming convention: [data set]_[assembly]_salmon.merged.gene_counts.tsv |
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Pulled main to my local:
Fast-forward ExternalData/30-681594536_SL4_salmon.merged.gene_counts.tsv | 34076 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ExternalData/30-681594536_SL5_salmon.merged.gene_counts.tsv | 36649 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 70725 insertions(+)
Number of inserted (new) lines matches with results from related ticketed IGBF-3466.
Sanity checking passed. Moving to DONE.
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
Branch: https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3471