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  1. IGB
  2. IGBF-3485

Update htsjdk-igb version 3.0.0 README file

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      • Add open JDK requirements and build instructions to the README file of htsjdk-igb 3.0.0
      • Mention how to develop newer versions of htsjdk for future contributors

        Attachments

          Activity

          kgopu Kaushik Gopu created issue -
          kgopu Kaushik Gopu made changes -
          Field Original Value New Value
          Epic Link IGBF-1531 [ 17617 ]
          Hide
          kgopu Kaushik Gopu added a comment - - edited
          • Updated the README file with all the necessary information provided in the description
          • A new version of README file is available in this branch.
          • Moving to first level review
          Show
          kgopu Kaushik Gopu added a comment - - edited Updated the README file with all the necessary information provided in the description A new version of README file is available in this branch . Moving to first level review
          kgopu Kaushik Gopu made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          kgopu Kaushik Gopu made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Assignee Kaushik Gopu [ kgopu ] Nowlan Freese [ nfreese ]
          Hide
          nfreese Nowlan Freese added a comment -

          Testing:

          • Change "Look for htsjdk-igb-.jar in the build/libs folder." to "Look for htsjdk-igb.jar in the build/libs folder."
          • Change "are changes in build.gradle file (to uses it as OSGI bundle)" to "are changes in the build.gradle file (to use it as an OSGI bundle)".
          • Can you take a look at the 2.16.3 readme? I think we worked off of 2.16.2 and there are some differences in the build and deploy section of 2.16.3. For example, we may need to include gradle install and gradle deploy in the 3.0.0 readme.
          Show
          nfreese Nowlan Freese added a comment - Testing: Change "Look for htsjdk-igb-.jar in the build/libs folder." to "Look for htsjdk-igb.jar in the build/libs folder." Change "are changes in build.gradle file (to uses it as OSGI bundle)" to "are changes in the build.gradle file (to use it as an OSGI bundle)". Can you take a look at the 2.16.3 readme? I think we worked off of 2.16.2 and there are some differences in the build and deploy section of 2.16.3. For example, we may need to include gradle install and gradle deploy in the 3.0.0 readme.
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Kaushik Gopu [ kgopu ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
          Hide
          kgopu Kaushik Gopu added a comment -
          • Made a few grammatical corrections and provided instructions to deploy artifacts locally and remotely.
          • Changes available in this branch
          Show
          kgopu Kaushik Gopu added a comment - Made a few grammatical corrections and provided instructions to deploy artifacts locally and remotely. Changes available in this branch
          kgopu Kaushik Gopu made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          kgopu Kaushik Gopu made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          Hide
          nfreese Nowlan Freese added a comment -

          I read over the readme with Kaushik and we made a few changes.

          Ready for pull request.

          Show
          nfreese Nowlan Freese added a comment - I read over the readme with Kaushik and we made a few changes. Ready for pull request.
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          nfreese Nowlan Freese made changes -
          Assignee Kaushik Gopu [ kgopu ]
          Hide
          nfreese Nowlan Freese added a comment -

          Changes for this ticket are included as commits in a pull request for IGBF-3484.

          Show
          nfreese Nowlan Freese added a comment - Changes for this ticket are included as commits in a pull request for IGBF-3484 .
          ann.loraine Ann Loraine made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          Hide
          ann.loraine Ann Loraine added a comment -

          PR is merged. Ready for testing.

          Show
          ann.loraine Ann Loraine added a comment - PR is merged. Ready for testing.
          Hide
          nfreese Nowlan Freese added a comment -

          See testing in IGBF-3484.

          Closing ticket.

          Show
          nfreese Nowlan Freese added a comment - See testing in IGBF-3484 . Closing ticket.
          nfreese Nowlan Freese made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          nfreese Nowlan Freese made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          nfreese Nowlan Freese made changes -
          Assignee Kaushik Gopu [ kgopu ]

            People

            • Assignee:
              kgopu Kaushik Gopu
              Reporter:
              kgopu Kaushik Gopu
            • Votes:
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              Dates

              • Created:
                Updated:
                Resolved: