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  1. IGB
  2. IGBF-3490

Import HTSJDK 3.0.5 as OSGI bundle

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          The HTSJDK 3.0.0 has a vulnerability caused by a dependency on the commons-compress library. The HTSJDK 3.0.5 release includes minor features and resolves the vulnerability.
          Note: This is the final version of HTSJDK to support Java 8

            Attachments

              Issue Links

              blocks

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3465 Update BigWig/BigBed htsjdk-igb version

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3670 Fix IGB unable to load files/folders with spaces

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3484 Update htsjdk-igb to 3.0.0

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                kgopu Kaushik Gopu created issue -
                kgopu Kaushik Gopu made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                nfreese Nowlan Freese made changes -
                Sprint Fall 6 [ 182 ] Fall 5 [ 181 ]
                nfreese Nowlan Freese made changes -
                Epic Link IGBF-1765 [ 17855 ] IGBF-3467 [ 22628 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Kaushik Gopu [ kgopu ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3484 [ IGBF-3484 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 5 [ 181 ] Fall 5, Fall 6 [ 181, 182 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                kgopu Kaushik Gopu made changes -
                Assignee Kaushik Gopu [ kgopu ] Ann Loraine [ aloraine ]
                kgopu Kaushik Gopu made changes -
                Link This issue blocks IGBF-3465 [ IGBF-3465 ]
                ann.loraine Ann Loraine made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Closed [ 6 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3670 [ IGBF-3670 ]

                  People

                  • Assignee:
                    kgopu Kaushik Gopu
                    Reporter:
                    kgopu Kaushik Gopu
                  • Votes:
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                    Watchers:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: