Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3515

Test bitbucket pipeline reconfiguration

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Confirm that new bitbucket pipeline configuration (using new Docker image) can run and built installers.

            Attachments

              Activity

              Ascending order - Click to sort in descending order
              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-3142 [ 21688 ]
              ann.loraine Ann Loraine made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment - - edited

              Testing strategy using aloraine fork:

              Show
              ann.loraine Ann Loraine added a comment - - edited Testing strategy using aloraine fork: Fork David Norris repo (my fork: https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/src/main-JDK21/ ) Check out main-JDK21 from DN fork Push main-JDK21 to aloraine fork to trigger pipeline Check that release and branch pipelines can run
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment - - edited

              Branch pipelines ran but release pipeline did not. Bitbucket yml file needs to be updated with new file names.

              Show
              ann.loraine Ann Loraine added a comment - - edited Branch pipelines ran but release pipeline did not. Bitbucket yml file needs to be updated with new file names.
              ann.loraine Ann Loraine made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked lower
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              I forked DCN repository and checked that the pipelines could properly run using main-JDK21 branch.

              My fork: https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/src/main-JDK21/

              There are now four new installers for main-JDK21 available in https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/downloads/.

              They are:

              • IGB-macos-main-JDK21_amd64.dmg
              • IGB-macos-main-JDK21_aarch64.dmg (new chip)
              • IGB-windows-main-JDK21_amd64.exe
              • IGB-linux-main-JDK21_amd64.sh

              To test, confirm the installers work and can install the new version of IGB onto Linux, Apple Intel, Apple M1/2, and Windows platforms

              Show
              ann.loraine Ann Loraine added a comment - I forked DCN repository and checked that the pipelines could properly run using main-JDK21 branch. My fork: https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/src/main-JDK21/ There are now four new installers for main-JDK21 available in https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/downloads/ . They are: IGB-macos-main-JDK21_amd64.dmg IGB-macos-main-JDK21_aarch64.dmg (new chip) IGB-windows-main-JDK21_amd64.exe IGB-linux-main-JDK21_amd64.sh To test, confirm the installers work and can install the new version of IGB onto Linux, Apple Intel, Apple M1/2, and Windows platforms
              ann.loraine Ann Loraine made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 8 [ 184 ] Fall 8, Spring 1 [ 184, 185 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              nfreese Nowlan Freese made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              nfreese Nowlan Freese made changes -
              Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 8, Spring 1 [ 184, 185 ] Fall 8, Spring 1, Spring 2 [ 184, 185, 186 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] Pull Request Submitted [ 10101 ]
              nfreese Nowlan Freese made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              nfreese Nowlan Freese made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              nfreese Nowlan Freese made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
              Hide
              Permalink
              nfreese Nowlan Freese added a comment - - edited

              Testing:

              • Downloaded the logs from pipeline - https://bitbucket.org/lorainelab/integrated-genome-browser/pipelines/results/680
              • No mention of hillrunner/norris/dcnorris, so it looks like David's repos have been replaced.
              • The image used is listed as

                build : docker.io/lorainelab/igb-maven-install4j

              • The env.sh file is not present in the Integrated Genome Browser folder after installation on Linux/Mac/(WINDOWS?)
              • There are four files produced that are located in the Downloads folder:
                • IGB-macos-universal-main-JDK21-with-javafx-no-theme.dmg
                • IGB-windows-main-JDK21-with-javafx-no-theme_amd64.exe
                • IGB-linux-main-JDK21-with-javafx-no-theme_amd64.sh
                • main-JDK21-with-javafx-no-theme.jar
              • The dmg, exe, and sh files work to install IGB on Mac M1 and Intel, Windows 10 and 11, and Ubuntu, respectively.

              Closing ticket.

              Show
              nfreese Nowlan Freese added a comment - - edited Testing: Downloaded the logs from pipeline - https://bitbucket.org/lorainelab/integrated-genome-browser/pipelines/results/680 No mention of hillrunner/norris/dcnorris, so it looks like David's repos have been replaced. The image used is listed as build : docker.io/lorainelab/igb-maven-install4j The env.sh file is not present in the Integrated Genome Browser folder after installation on Linux/Mac/(WINDOWS?) There are four files produced that are located in the Downloads folder: IGB-macos-universal-main-JDK21-with-javafx-no-theme.dmg IGB-windows-main-JDK21-with-javafx-no-theme_amd64.exe IGB-linux-main-JDK21-with-javafx-no-theme_amd64.sh main-JDK21-with-javafx-no-theme.jar The dmg, exe, and sh files work to install IGB on Mac M1 and Intel, Windows 10 and 11, and Ubuntu, respectively. Closing ticket.
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ] Ann Loraine [ aloraine ]
              nfreese Nowlan Freese made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: