Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Sprint:Fall 8, Spring 1, Spring 2
Description
Change the negative log value y-axis to have a max of 20 after being transformed and make the higher numbers also 20 so that they are at the ceiling of the plot. James Pease recommends this so the plot looks more like a volcano.
Files:
- FindControlVsStressDEGenes-SL4-DESeq2.Rmd
- StatFunctions.R
Note: These changes need to be implemented with all of the other FindControlVsStress & MakeCustomVolcanoPlots markdowns.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3446 [ 22548 ] |
| Description |
Change the negative log value y-axis to have a max of 20 after being transformed and make the higher numbers also 20 so that are at the ceiling of the plot. James Pease recommends this so the plot looks more like a volcano.
Files: * FindControlVsStressDEGenes-SL4-DESeq2.Rmd * StatFunctions.R Note: These changes need to be implemented with all of the other FindControlVsStress & MakeCustomVolcanoPlots markdowns. |
Change the negative log value y-axis to have a max of 20 after being transformed and make the higher numbers also 20 so that they are at the ceiling of the plot. James Pease recommends this so the plot looks more like a volcano.
Files: * FindControlVsStressDEGenes-SL4-DESeq2.Rmd * StatFunctions.R Note: These changes need to be implemented with all of the other FindControlVsStress & MakeCustomVolcanoPlots markdowns. |
| Sprint | Fall 8 [ 184 ] | Fall 8, Spring 1 [ 184, 185 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Robert Reid [ robertreid ] | Ann Loraine [ aloraine ] |
| Link | This issue relates to IGBF-3540 [ IGBF-3540 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Fall 8, Spring 1 [ 184, 185 ] | Fall 8 [ 184 ] |
| Sprint | Fall 8 [ 184 ] | Fall 8, Spring 1 [ 184, 185 ] |
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Molly Davis [ molly ] | Robert Reid [ robertreid ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Sprint | Fall 8, Spring 1 [ 184, 185 ] | Fall 8, Spring 1, Spring 2 [ 184, 185, 186 ] |
| Rank | Ranked higher |
| Attachment | Screenshot 2024-01-22 at 3.34.17 PM.png [ 18180 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Robert Reid [ robertreid ] | Molly Davis [ molly ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Molly Davis [ molly ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Link | This issue relates to IGBF-3558 [ IGBF-3558 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Molly Davis [ molly ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |