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  1. IGB
  2. IGBF-3530

Change the negative log value y-axis max

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Change the negative log value y-axis to have a max of 20 after being transformed and make the higher numbers also 20 so that they are at the ceiling of the plot. James Pease recommends this so the plot looks more like a volcano.

          Files:

          • FindControlVsStressDEGenes-SL4-DESeq2.Rmd
          • StatFunctions.R

          Note: These changes need to be implemented with all of the other FindControlVsStress & MakeCustomVolcanoPlots markdowns.

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              relates to

              Task - A task that needs to be done. IGBF-3570 Create email draft to update Muday lab of volcano plot ceiling

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3520 Review scale of the Volcano plots regarding the Y axis ( -logPvalue)

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    Mdavis4290 Molly Davis
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                    • Created:
                      Updated:
                      Resolved: